Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02833 ATGGCTGTGGCCACTTCCAACTCTCTCATTCCCACCAAATCCTTACTCCCATCCAATTCCCTTGTCCCTTCCTCCAACCTCAACCAATGTTCCTTTCCTACCAAGTCCAAGCCCAGGCCCAAGTCCAAGCCCATCGAAGCAGTTCACGCTGCCGACAAACCCGCGGTCACCGATAAGTCCCCGACACGTGAGGCAAAATGGGCCGTGGACAGCTGGAAATCGAAGAAGGCCCTTCAACTGCCCGAATACCCGAACCAAGAGAATCTCCAATCGGTGCTGTCAACTCTCGAAGCCTTCCCTCCCATTGTCTTCGCTGGAGAGGCGAGGAGCCTGGAGGAACGACTGGGAGAAGCTGCGATGGGGAACGCTTTTCTTCTGCAGGGTGGAGATTGTGCAGAGAGCTTCAAAGAGTTCAATGCCAACAACATTCGTGACACCTTCAGAATCCTTCTCCAGATGAGCGTTGTCATGATGTTTGGAGGCCAAATGCCTGTCATAAAGGTGGGAAGAATGGCGGGTCAATTTGCGAAACCGAGATCGGAAGCATTGGAGGAGAAAAACGGAGTGAAGTTGCCGAGTTACAGAGGGGATAATGTGAATGGAGATGCATTTGAAGAGAAGACGAGAATTCCTGACCCAGAAAGGATGATTAGAGCGTATTGTCAATCTGCGGCGACACTCAATCTTCTGAGAGCTTTTGCGACGGGAGGGTATGCTGCTATGCAAAGGGTCACCCAATGGAATTTGGACTTTACGCAGCACAGCGAACAGGGAGACAGGTACCTAGAACTTGGTCACCGAGTTGATGAGGCCCTTGGATTCATGGATGCTGCTGGCCTGACAGTAGACCATCCTATAATGAAAACAACTGAGTTCTGGACTTCCCATGAATGTTTGTTATTGCCATATGAGCAATCACTCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGATTGCTCTGCCCATATGCTTTGGGTTGGGGAACGGACCAGGCAGCTAGATGGTGCCCATGTTGAATTTCTAAGAGGAGTTGCTAATCCCCTAGGAATCAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAGACTCATCGAGATCTTGAATCCCCAAAACAAAGCAGGGAGAATAACTGTGATAACAAGGATGGGAGCTGAAAATATGAGGGTAAAGCTTCCTCATCTAATCAGGGCAGTACGCAGAGCAGGGCAAATTGTGACATGGGTCAGCGATCCTATGCATGGAAACACTATAAAGGCTCCCTGTGGACTCAAAACTCGCCCCTTCGATGCCATCAGGGCGGAAGTGACAGCATTCTTCGACATGCACGACCAAGAAGGAAGCCACCCAGGTGGGGTTCATCTAGAGATGACGGGTCAGAATGTGACTGAGTGCATTGGTGGGTCAAGGACGGTTACATTTGATGATCTCAGTTCACGTTATCACACACACTGTGACCCCAGGCTAAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATCGCTGAACGGCTAAGAAAGAGTAGGATCAGATCGGAGCAGAGCCAGCCCCTTTTCTCTTTAGGGATGTAA 1575 0.494 MAVATSNSLIPTKSLLPSNSLVPSSNLNQCSFPTKSKPRPKSKPIEAVHAADKPAVTDKSPTREAKWAVDSWKSKKALQLPEYPNQENLQSVLSTLEAFPPIVFAGEARSLEERLGEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVMMFGGQMPVIKVGRMAGQFAKPRSEALEEKNGVKLPSYRGDNVNGDAFEEKTRIPDPERMIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTQHSEQGDRYLELGHRVDEALGFMDAAGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVRLIEILNPQNKAGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVTAFFDMHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSEQSQPLFSLGM. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02833 524 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 67 509 IPR002480 GO:0003849|GO:0009073
Seca4g02833 524 Pfam Class-II DAHP synthetase family 67 503 IPR002480 GO:0003849|GO:0009073
Seca4g02833 524 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g02833 524 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 256 508 - -
Seca4g02833 524 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 41 516 IPR002480 GO:0003849|GO:0009073
Seca4g02833 524 MobiDBLite consensus disorder prediction 39 62 - -
Seca4g02833 524 Gene3D Aldolase class I 267 508 IPR013785 -
Seca4g02833 524 Gene3D Aldolase class I 100 266 IPR013785 -
Seca4g02833 524 SUPERFAMILY Aldolase 59 507 - -
Seca4g02833 524 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02833 Seca-Chr4 49030647 49035006 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02833 K01626 - gmx:100797019 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02833 4 49030647 49035006 Seca4g02833 4 49030647 49035006 ECH
Seca8g01949 8 40841237 40845557 Seca4g02833 4 49030647 49035006 PCT