Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01171 ATGGCTCTGTTTTCCTCTGTTTCACTCTGCATGCTTCTCTTCTCCTCCTTCTTTTTCCTCACTTCCTTCTCTTCCAAACTTAACAACAACTCACTCTCACTCTCTTTCCCTCTCACCACAGAAAAACCTCTTTCTTCAAATTTCAATACCAACCCAAAACTCAGAACCCTTTATTCTTCTTCTTCATACAACTTGAAATCCTCCTTCAAATACTCCATGGCTCTGGTGGTGACACTCCCCATTGGGACTCCACCACAGCTTCAACAAATGGTGTTGGACACTGGAAGCCAACTCTCATGGATTCAGTGTCACAACAAGGCACCTAAAAAACCTCCCCCTACGACGTCGTTTGACCCTTCTCTCTCCTCTTCTTTCTCCACCTTACCCTGCAACCACCCACTTTGTAAACCCCGAGTTCCCGATTTTACCCTCCCCACAACCTGCGACCAGAACCGCCTCTGTCACTATTCCTACTTCTACGCCGACGGAACCTACGCCGAGGGCAATCTCGTCAAAGAAAAACTCACCTTCTCCTCTTCCCAAACTACCCCTCCTCTCATACTTGGCTGCACCACTGAATCCAGCGACGCCAGGGGCATTTTGGGAATGAATCTTGGTCGCTTGTCCTTCCCTTCCCAAGCAAAAATTACTAAATTTTCCTACTGCGTCCCCACCCGACAAACCCGACCCGTACCCGGAAAATTTTACCTCGGGAACAACCCGGATTCAGCCCGGTTTCGTTATGTTAACATGTTGACCTTCAGTCAACGTCAACGCATGCCGAACCTGGACCCTTTAGCCTACACCGTACCACTGCAAGGGATAAGAATCGGTGGAAAGAACCTGAACATTCCACCCTCTGTTTTCAGGCCCAATGCTGGCGGGTCGGGTCAAACCATGATTGACTCCGGATCCGAATTCACTTTTCTTGTGGACGAGGCGTATGATAAGGTGCGGGATGAGGTTGTGAGATTGGTGGGGGCAAGGATGAAGAAGGGGTACGTGTACGGTGGTGTTTGCGACATGTGTTTCGATGGTGATGCGATGGAGATCGGACGGTTGGTAGGAGACATGGTGTTCGAGTTCGAGAAAGGCGTGGAGATAGTGATACGGAAAGAGAGGGTTCTTGCTGACGTGGGTGGTGGGGTCCATTGTGTGGGAATTGGAAGGTCAGAACGATTGGGTGCGGCCAGTAACATTATTGGAAACTTCCATCAACAGAATCTATGGGTAGAGTTTGATCTGGTAAATCGTAGGGTTGGCTTCGGTGAGGCTGATTGTAGCAGATTAGCTAAGTGA 1299 0.4927 MALFSSVSLCMLLFSSFFFLTSFSSKLNNNSLSLSFPLTTEKPLSSNFNTNPKLRTLYSSSSYNLKSSFKYSMALVVTLPIGTPPQLQQMVLDTGSQLSWIQCHNKAPKKPPPTTSFDPSLSSSFSTLPCNHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVKEKLTFSSSQTTPPLILGCTTESSDARGILGMNLGRLSFPSQAKITKFSYCVPTRQTRPVPGKFYLGNNPDSARFRYVNMLTFSQRQRMPNLDPLAYTVPLQGIRIGGKNLNIPPSVFRPNAGGSGQTMIDSGSEFTFLVDEAYDKVRDEVVRLVGARMKKGYVYGGVCDMCFDGDAMEIGRLVGDMVFEFEKGVEIVIRKERVLADVGGGVHCVGIGRSERLGAASNIIGNFHQQNLWVEFDLVNRRVGFGEADCSRLAK. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01171 432 ProSiteProfiles Peptidase family A1 domain profile. 75 423 IPR033121 -
Seca8g01171 432 SUPERFAMILY Acid proteases 76 430 IPR021109 -
Seca8g01171 432 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Seca8g01171 432 Gene3D Acid Proteases 238 432 IPR021109 -
Seca8g01171 432 FunFam aspartic proteinase PCS1 238 431 - -
Seca8g01171 432 FunFam Aspartyl protease family protein 55 236 - -
Seca8g01171 432 CDD pepsin_A_like_plant 76 427 IPR034161 -
Seca8g01171 432 PANTHER ASPARTYL PROTEASE-RELATED 14 428 IPR001461 GO:0004190|GO:0006508
Seca8g01171 432 Pfam Xylanase inhibitor N-terminal 76 238 IPR032861 -
Seca8g01171 432 Gene3D Acid Proteases 55 237 IPR021109 -
Seca8g01171 432 Pfam Xylanase inhibitor C-terminal 267 423 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01171 Seca-Chr8 17556530 17557828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01171 77 432 Miscellaneous Gene Families AT1G44130 23.232 3.14e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01171 - - gmx:100796435 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01171 8 17556530 17557828 Seca8g01171 8 17556530 17557828 ECH
Seca8g01171 8 17556530 17557828 Seca6g02360 6 85689355 85690710 PCT