Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02360 ATGCCTCTGTCACCACGTTCCAACATGCTTCTCTGTTTCTTCTTTTTCCTTCTCTTCTCTGCAAACCTCTCTCTCTCTGTACAACACAACCACAACTCCACCAATCTCTCACTCTCTTTCCCTCTCACTTCACTCCCTCTCTCAACCAACACCACCTCCAAAATGCTTTATGGCTCTCTGATTTCATCTTCAACAAGACGCAACCCAAAACTCACAACACCTTCCGGCTACAACTACAAGCTTTCTGTCAAATACTCAATGGCTCTCATCGTGGCACTTCCCATTGGTACACCACCACAGCTTCAGCAAATGGTGTTGGACACTGGAAGCCAACTCTCGTGGATTCAGTGTCACAAAAAAGCACCACCTAAGAAGATGCCTCCTCCATCGGCGTCGTTTGATCCTTCTCTCTCTTCCACTTTCTCTATTCTCCCCTGTACTCACCCTCTCTGTAAACCTCGAATTCCCGATTTTACCCTTCCCACTTCCTGTGACCAGAACCGCCTCTGCCACTACTCTTACTTCTACGCCGACGGGACCTACGCTGAGGGCAATCTCGTCAGAGAAAAATTCACCTTCTCACGTTCTGTTTTTACCCCTCCCCTCATCCTCGGTTGCGCTACTGAGTCTAGCGACGCCAGGGGCATTTTGGGAATGAATCTCGGACGGTTATCCTTTGCCTCACAATCCAAAATTACCAAATTCTCCTACTGTGTACCCACCCGTCAGGCCCGACCCGGATCTCTCCCAACCGGGTCGTTTTACCTTGGTAACAACCCCAGTTCTTCTGGGTTCCAGTACGTTGGGATGTTGAACTTTCCCCAGAGTCAACGCATGCCGAACCTTGACCCCTTAGCCTACACCGTTGCCATGCAGGGGATAAGGATCGGCGGGAGGAGGTTGGGAATCTCGCCGGCGGTTTTCCGTGCGGATGCTGGCGGGTCGGGTCAAACCATGGTTGACTCTGGATCTGAGTTTACTTACTTGGTTAATGAGGCTTACAATAAGGTGCGGGAGGAAGTAGTGAGGGTTGTGGGGCCCAGGATGAAGAAGGATTACGTGTACGGTGGAGTTGCTGACATGTGTTTCGATGGTAATGCGATCCAGATCGGACGGCTGATAGGGGAAATGGTGTTTGAGTTTGAAAAAGGAGTGGAGATAGTGATTCCAAGGGAAAGGGTCCTTGCTGACGTTGGAGGTGGGGTCCACTGCGTGGGGATTGGAAGCTCAGATAAATTGGGTGCGGCCAGTAACATTATTGGGAATTTTCATCAGCAAAATATGTGGGTTGAATTTGATCTGGCCAATCGTAGATTGGGTTTCGGTAAAGCTGATTGTAGCAGATTGGCGAAGTAA 1356 0.4985 MPLSPRSNMLLCFFFFLLFSANLSLSVQHNHNSTNLSLSFPLTSLPLSTNTTSKMLYGSLISSSTRRNPKLTTPSGYNYKLSVKYSMALIVALPIGTPPQLQQMVLDTGSQLSWIQCHKKAPPKKMPPPSASFDPSLSSTFSILPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADGTYAEGNLVREKFTFSRSVFTPPLILGCATESSDARGILGMNLGRLSFASQSKITKFSYCVPTRQARPGSLPTGSFYLGNNPSSSGFQYVGMLNFPQSQRMPNLDPLAYTVAMQGIRIGGRRLGISPAVFRADAGGSGQTMVDSGSEFTYLVNEAYNKVREEVVRVVGPRMKKDYVYGGVADMCFDGNAIQIGRLIGEMVFEFEKGVEIVIPRERVLADVGGGVHCVGIGSSDKLGAASNIIGNFHQQNMWVEFDLANRRLGFGKADCSRLAK. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02360 451 Gene3D Acid Proteases 64 253 IPR021109 -
Seca6g02360 451 CDD pepsin_A_like_plant 90 446 IPR034161 -
Seca6g02360 451 Gene3D Acid Proteases 254 451 IPR021109 -
Seca6g02360 451 Pfam Xylanase inhibitor N-terminal 91 249 IPR032861 -
Seca6g02360 451 FunFam aspartic proteinase PCS1 257 450 - -
Seca6g02360 451 PANTHER ASPARTYL PROTEASE-RELATED 13 447 IPR001461 GO:0004190|GO:0006508
Seca6g02360 451 SUPERFAMILY Acid proteases 90 449 IPR021109 -
Seca6g02360 451 FunFam Aspartyl protease family protein 67 253 - -
Seca6g02360 451 ProSiteProfiles Peptidase family A1 domain profile. 89 442 IPR033121 -
Seca6g02360 451 Pfam Xylanase inhibitor C-terminal 286 442 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02360 Seca-Chr6 85689355 85690710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02360 91 451 Miscellaneous Gene Families AT1G44130 22.613 5.03e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02360 - - var:108326882 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02360 6 85689355 85690710 Seca6g02360 6 85689355 85690710 ECH
Seca8g01171 8 17556530 17557828 Seca6g02360 6 85689355 85690710 PCT