Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01065 ATGGCTTACTGCTCTAACAAGGATACTGATATAAATGCTCAATTAACTTGGTGGTATGTAGATAAATCTTACGAAGAACTCAAAAGGGGGAGTCACAATGTGAAAACCTCTGATGAGACTTTCACTTGTCCTTACTGCCCTGAGAGAAAACAGGATTACAAGTACAACGAAATCCTTAACCATGCTTCTGGGGTGGGTCGGAGTAGTTCAGAAAAGAGAAGTATTAAAGAGAAGGCTAATCATCTGGCATTAGTAAAATATTTGGAAAAGGATCTTATGAGCGATGGCCCATCAAAACTCGTAGATAAAGGTACACAGTTATTAAGCCCGGGACAAACTGTAATTGCTCACTGCTCTAACAAGGATACCGATATAAGTGCATCTCAAATAAGTTGGTGGTATGTAGACACATCTTATGAAGAGCTCAAAAATGGAAGTTGCAATGTGAAAACCTCAGATGAGACTTTCATCTGTCCGTACTGCCCTAAGGGCAAACAGAATTATGCGTATAGGGAACTCCTAGAACATGCTTATATGGTGGGTCGGAGTAGTTCAGAAAAGAGAAGTGCTAGAGAGAGGGCTAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAGTATGGGTGGCCCGTCAAAACCTGTTGATAAAGGTACCAAAATATCAAGTCCAGGACAAACTGTAATGCCTCACTGCTCTAACAAGGATACTGGTATAAGTGCATCTCAAATAAGTTGGTGGTATGTAGATAAATTTTATATAGAACTCAGAAAGGGTAGTCACCGTGTGAGAACCTCAGATGAGACTTTCATTTGTCCATACTGCCCTAAAAGGAGAAAACAGGATTATGTGTACAGGGAACTCCTTGAACATGCTTCCGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAGTATCAAAGAGAAGGCAACTCATCTGGCTTTAGTAAAATATTTGGAAAAAGATCTTATGAATGTGAGTGGTCCATCGACACCTGTAAATGAAGGAACCATAAAACTACCCCCAGGAGAAACTGTGGTGGGTCGCTGCTCTGACAAAGATACTACTATAAGTGATTCTCAAATAAGTTGGTGGTGTGTAGATAAAGCATATAAAGAACTCAAAAAGGGGAGTCACATTGTGCAAACCTCAGATGAGACTTTCACTTGCCCATACTGCCCTAATAAAAAGAGAAAACGAGATTATGTGTACAGGGAAATCCTTGAACATGCTTCCGGGGTGGGTCGGAGTTGCTCACAAAAAAGAGGTGCCATTGAAAAGGCCAATCATCTGGCTTTAATGAAATATTTGAAAAAGGATCTTAAACATGTGGGTGGTGCATCAAAACCTATGGATGAAGGTACCATAATGCCAAACCCAGGAGAAACTGTGAAGGATCACTACTCTCACAAAGATACTGATAAAAGGGTAGCTCAAATAAATGGGTGGTATATAAATAAATCCTATGAAGAACTCAAGAGGGGAAGTCAGGATGTGAAAACCTCAGAAGGAACTTTTACATGTCCATACTGTCCTGATAAAAAAAGAAAACGGGATTATGTGTACAGGGAAATCCTTGAACATGCTACTGGGGTGGGTCAGAGTAGCTCACAAAAGAGAAGTGCCATTGAAAAGGCCAATCACCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAATGTGGATCATCCATCAAAACCTGCAAATGAAGGCATTCCTCCTTTCAATTCTGATGAGCAGTTTGTGTGGCCATGGACTGGGATTGTGGTTAATATTCCCACTAGACAGACAGAAGATGGACAATGTTTTGGGGAAAGTGGTTCCAAGCTAAGGGATGAATATCGAAGCAGGGGTTTTAATCCACGTAGAGTCCGCACTCTTTGGAGTTTCTGGGGTCATTCTGGAACTGCAGTCGTGGAATTCAATAAAAATTGGTCAGGCTTAGCTAATGCTCTGGCATTTGAAAGAGCATATGAATTAGATCATCATGGGAAAAAGGACTGGTTTGCTAATACTGAGCAGAAGTCTGGTCTTTATGCATGGGTTGCCCGAGCTGATGACTATAAGACGTACAATATAATTGGGGAACAACTACAGAAGATAGGGGATGTCAAAACAATACCTGAAATTATGAAAGAAGAAGCTCGAATGCAGGATAAACTTGTGTCCAGTTTGAAAAACATTCTTCAGGTCAAGAACAAACAGTTAATGGAGATGGAAGTGATATGCAGTGAAATTACACTTCGCATGGACATTGTAATGGGGGAAATAGACAAGCTCACTCAAGCTCACAGTCAGGAGATGAAGAAAATACAGTCAAGTGCAACTCAACACTTTCAGAGTATTTTTCATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAGCTTGAGTTGCGAAGAATTGAACTGGAAAGACGCGAGGCACATAATGAAAGTGAAAGAAAAAAGTTGGAAGAAGAAATTAAGGAGAATGCAGTGAAACATAGCTCTGTTGAAATGGCTGTTCTGGAGCAACAGAAAGCTGGTGAAAATGTTTTGAAACTGGCTTCTGATCAAAAGCGACAAAAAGAACAACTCCATGCTAAAATCATCCAGCTTGAAAAACAACTAGATGTGAAACAAAAACTGGAATTGGAGATTCAACAACTAAAAGGAAAATTAAATGTCATGAAACACATTGAAGATGATGGAGACTCAGAAGTTCTGAATAAGATGGATGCCTTATATAAGGATTTAAGAGAAAAGGAACAGTCAGTTCGAGACTTGGATACATTGAACCAAACACTGATCATTAAAGAGCGCAAGAGCAATGTTGAGCTGCAGGAAGCTCGAAAAGAATTGATTGATGGCATTAAAGAGATATCTAGTCGTGCCAATATTGGTGTGAAGAGAATGGGGGAACTTGATACTAGACCATTCCTAGAAGCTATGAAAAAAAAATATAACGAGGAGGACGCAGAAGATAAAGCTTCAGAACTGTGTTCGTTATGGGAAGAGTATCTGAAAGACCCTGACTGGCATCCATTTAAAATTTCCATAATTGAAGGGAAACATCAGGAAATCATAGATGATGAAGATGAAAAGCTGAAAGGACTGAAAAACGAGATGGGTGAAGGAGTATACAAGGCTGTGGTGGCAGCTTTGACAGAGATAAATGAATATAATCCAAGTGGGCGGTATATAACCACAGAATTATGGAATTATGAAGAGGGAAAGAGAGGAACTTTGCAAGAAGGAGTACAATTTTTATTGAAGCAATGGAAACTACAAAAACAAAAACGTGGAATGACATGA 3312 0.3964 MAYCSNKDTDINAQLTWWYVDKSYEELKRGSHNVKTSDETFTCPYCPERKQDYKYNEILNHASGVGRSSSEKRSIKEKANHLALVKYLEKDLMSDGPSKLVDKGTQLLSPGQTVIAHCSNKDTDISASQISWWYVDTSYEELKNGSCNVKTSDETFICPYCPKGKQNYAYRELLEHAYMVGRSSSEKRSARERANHLALVKYLEKDLMSMGGPSKPVDKGTKISSPGQTVMPHCSNKDTGISASQISWWYVDKFYIELRKGSHRVRTSDETFICPYCPKRRKQDYVYRELLEHASGVGQSSSQKRSIKEKATHLALVKYLEKDLMNVSGPSTPVNEGTIKLPPGETVVGRCSDKDTTISDSQISWWCVDKAYKELKKGSHIVQTSDETFTCPYCPNKKRKRDYVYREILEHASGVGRSCSQKRGAIEKANHLALMKYLKKDLKHVGGASKPMDEGTIMPNPGETVKDHYSHKDTDKRVAQINGWYINKSYEELKRGSQDVKTSEGTFTCPYCPDKKRKRDYVYREILEHATGVGQSSSQKRSAIEKANHLALVKYLEKDLMNVDHPSKPANEGIPPFNSDEQFVWPWTGIVVNIPTRQTEDGQCFGESGSKLRDEYRSRGFNPRRVRTLWSFWGHSGTAVVEFNKNWSGLANALAFERAYELDHHGKKDWFANTEQKSGLYAWVARADDYKTYNIIGEQLQKIGDVKTIPEIMKEEARMQDKLVSSLKNILQVKNKQLMEMEVICSEITLRMDIVMGEIDKLTQAHSQEMKKIQSSATQHFQSIFHGHERLKLQLESQKRELELRRIELERREAHNESERKKLEEEIKENAVKHSSVEMAVLEQQKAGENVLKLASDQKRQKEQLHAKIIQLEKQLDVKQKLELEIQQLKGKLNVMKHIEDDGDSEVLNKMDALYKDLREKEQSVRDLDTLNQTLIIKERKSNVELQEARKELIDGIKEISSRANIGVKRMGELDTRPFLEAMKKKYNEEDAEDKASELCSLWEEYLKDPDWHPFKISIIEGKHQEIIDDEDEKLKGLKNEMGEGVYKAVVAALTEINEYNPSGRYITTELWNYEEGKRGTLQEGVQFLLKQWKLQKQKRGMT. 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01065 1103 Pfam XS zinc finger domain 43 85 IPR005381 GO:0031047
Seca8g01065 1103 Pfam XS zinc finger domain 391 434 IPR005381 GO:0031047
Seca8g01065 1103 Pfam XS zinc finger domain 158 200 IPR005381 GO:0031047
Seca8g01065 1103 Pfam XS zinc finger domain 274 317 IPR005381 GO:0031047
Seca8g01065 1103 Pfam XS zinc finger domain 509 553 IPR005381 GO:0031047
Seca8g01065 1103 CDD RRM_like_XS 583 690 IPR005380 GO:0031047
Seca8g01065 1103 Coils Coil 788 829 - -
Seca8g01065 1103 MobiDBLite consensus disorder prediction 448 469 - -
Seca8g01065 1103 Pfam XH domain 969 1099 IPR005379 -
Seca8g01065 1103 Coils Coil 855 899 - -
Seca8g01065 1103 Gene3D XS domain 577 746 IPR038588 -
Seca8g01065 1103 PANTHER RIBONUCLEASE P SUBUNIT P38 467 1101 IPR045177 GO:0080188
Seca8g01065 1103 Pfam XS domain 580 691 IPR005380 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01065 Seca-Chr8 15389501 15396623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01065 - - gmx:100790814 1730.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01065 8 15389501 15396623 Seca8g01065 8 15389501 15396623 ECH
Seca8g01065 8 15389501 15396623 Seca6g02286 6 84231039 84232999 PCT