Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01053 ATGGTGTTGAAGAAGAGGCTTGATTATGGATTCAGGGGCTTTCAGGTCCCCACCATACCTAGACGTCCTAGATCTGCAAGACGGCGGGTTCCTTTCAACAAACCAACTGTGGGTGGCCATGCTTCTGCTTTTGATCTACTGGCATCTTTAGCTGGCAAATTGTTGCAAGAGAGTGAAAGTTCTGCTTCGAGCAATGCATCTGAAGGAAGTCATCAACCTGCCTTTAGCCAATGTGTTGTTGAGCAGGAAAGGAAAGATGAAGTTAAGCCATTAACAGAAGAGGGAATTTGTAATGGAAGTTGTGCAGAGTGTATTTTGATGACTGATGTTGGCTCACACAATGGTAGTAAGAAATGTCTTGAGTGTACTGAGACTGAGTGTGCACTAGAATGCATTTCAGCTAATAATAATTCAGACAGTTGGGAGAAAGTTAAAGCTGATGTGAAGTCTGAAATTTTCAAATGGGAGAATAAGTTTGAACATCATTCTAATAGATTAGTAAAAGTACCTGAAGACGAGGAGATTGGCAGGTCAGGCTTCAAGGGTTTATCTTTGGATAATAAATATAGTTTGAAGGATCCATTGGAATTGGGTCTTAACTCTCCTGCACTAATTGACATGAAAAGTGATGTTAAATCCCCATTTTGTAGGGAATTGTTTCCCAATGCTTCCTTTTCTGGGCAGGGAAATGATACTAAATTAGGTTTTATAGATGATGATGAAAACTTTTTAAGGTGCAACGAAGTTGGCACCAAGTCAAAGGCTTTTAGACCTTCAAAATGCATTGCACACCGAATAATCAGGAATCGGTTCACTTCCAAATCCTGGAAGGTTGCTCCAAAATTGAAGGATTGTGAACATTCTAGATTTGATAAGGGAGTAAAACCCTTGAATCGTAAGAGGAAGACTTGTTACAATTTTGAAAGACATCAGTATTACTCTCTTTTCAAGAGGAGGAGGTTCTATGACAAGGGTTCAGCAGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTATCTGATTCACCTGAGAAAGGAATTGGTGGAAACAACCCTAGCCCATCTGTTTCTAAGGGTCCCCGTGTTAAGTTTAGCATCAAGTCATTCAGGATACCAGAGCTTTATGTTGAGGTTCCTGAAACCACAACCGTTGGTTCATTAAAGAGGACAGTCATGGAGGCAGTGATGGCTATACTTGGAGATGGAGTGCGTGTTGGTGTTCTTGTTCAGGGGAAAAAAGTTAGAGATGATAAAAGAACACTTCTGCAGACTGGTATATCTTGTAAAGAAAATCTGGATAAACTCGGTTTCGTGTTGGAGCCTACTTCTTGTCAAGCTTCTCCAGCTGTTTGTGTTGGTGATCCTTCTCAATGCAATATATCCCAGCCGACCAGGTCCCCAGGAACTCCTGCGTTGGATTCAGGGATTTCTGATGCTGTACAGGATTCCTCTTTGTTGACAAATACTGGCATCCTTGTGGAAATTAACCATGACTCAACTTCTTCCCATACTGACATTATAGCTGATAAACTAACACCAGATTCCAGAGCGCTAGTTGTTGTTCCAGCTAGGAGCACAGAGGCATTACCTGTGGTCCCTGTGAATCAGAAAACTAAGCGCTCTGAGCTTGTACAGCGTAGAACCAGGAGGCCATTCTCTGCGTCTGAAGTTGAAGCACTTGTTCTGGCAGTTGAGGAACTTGGAACTGGAAGATGGCGTGATGTAAAGCTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTGAAGGATAAATGGAAAACATTAGTGCATACTGCAAAAATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTTCCCCAGGAGCTCTTGAACAGGGTTTTAGCTGCTCATGCTTACTGGTCTCACCACCAAGCTAAGCAGCATGTCAAGCATCAAGCTGGACCCATCAAGATCAAAGAAGCTTCAGCTGAAAGACACAGTGTTGATGGTAACCAAGCACTTGTGATGATGTAG 2001 0.4258 MVLKKRLDYGFRGFQVPTIPRRPRSARRRVPFNKPTVGGHASAFDLLASLAGKLLQESESSASSNASEGSHQPAFSQCVVEQERKDEVKPLTEEGICNGSCAECILMTDVGSHNGSKKCLECTETECALECISANNNSDSWEKVKADVKSEIFKWENKFEHHSNRLVKVPEDEEIGRSGFKGLSLDNKYSLKDPLELGLNSPALIDMKSDVKSPFCRELFPNASFSGQGNDTKLGFIDDDENFLRCNEVGTKSKAFRPSKCIAHRIIRNRFTSKSWKVAPKLKDCEHSRFDKGVKPLNRKRKTCYNFERHQYYSLFKRRRFYDKGSAVTSDGGFSSESVSDSPEKGIGGNNPSPSVSKGPRVKFSIKSFRIPELYVEVPETTTVGSLKRTVMEAVMAILGDGVRVGVLVQGKKVRDDKRTLLQTGISCKENLDKLGFVLEPTSCQASPAVCVGDPSQCNISQPTRSPGTPALDSGISDAVQDSSLLTNTGILVEINHDSTSSHTDIIADKLTPDSRALVVVPARSTEALPVVPVNQKTKRSELVQRRTRRPFSASEVEALVLAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLAAHAYWSHHQAKQHVKHQAGPIKIKEASAERHSVDGNQALVMM. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01053 666 ProSiteProfiles Myb-like domain profile. 544 599 IPR001005 -
Seca8g01053 666 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 545 603 IPR017930 -
Seca8g01053 666 MobiDBLite consensus disorder prediction 327 359 - -
Seca8g01053 666 CDD SANT_TRF 550 600 - -
Seca8g01053 666 SMART sant 548 601 IPR001005 -
Seca8g01053 666 Gene3D - 537 641 - -
Seca8g01053 666 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 641 IPR031105 -
Seca8g01053 666 SUPERFAMILY Homeodomain-like 550 630 IPR009057 -
Seca8g01053 666 MobiDBLite consensus disorder prediction 329 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01053 Seca-Chr8 15134182 15137952 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01053 - - gmx:100795471 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03868 4 68083289 68087915 Seca8g01053 8 15134182 15137952 ECH
Seca8g01053 8 15134182 15137952 Seca8g01053 8 15134182 15137952 ECH