Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03868 ATGGTCTTGCAGAAGAGATTAGACTACGGATTTAATGGCTACAGGGCACCGGCCACACCTCAATCTATCCGATCAACTAGGAGGAGGTCTAAATTTCAAAGAAGAGCAGAGGACAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGGTAAATTGTTGCAAGAGAAAGAGAATACAACCATGTATAGTGATACATCATCAGAAAAGGATCAGCATGGATCTGTAGAAGAGTCCCAAGATGCAAATAAATCATTCAAAGCTGAGGTTTCTGATGAAGGAAGTTGTGACAAAAAATGTTTCTCTCTTCTTTCTTCTCAAACAAACAATCAATTTTCCCCTTTGAAAGAATTACCACATCCTGAAGTTGATGGCCATTCAGGCATTGCTTCTACAGTAACAGGTTCTAGTTACTCAGAGAGGTTCGATGCAGAGAAATTGATGGATGGAAAAAGCCATAACAAAAAGGAAAATGATACTAGCAAAGTTAAATTAGATTCTTCTGGTTATCCAGTAGATAGTAGTTTCAAGTTAGATGTTGATACAAGTAAAGTAAAGGATGAGCTGCATAAGTTTGAGAAGGTACCAATTGGCAATGGGACTGAGATGTGCAGTTTTGAGGATCTGTTGAATGAAAATCCCCCTGCATTAATCAGTGGCAATGCCAAATTCTCTGGGTATAATGACAGGATTCAATGTAGCTCATTGTCCAGAGGTTGTGACAATGTACCAATAGTTAGTAGAGATGATGACGAAAACTCTTCAGGGTGTACTCACCCTAGTACAAAAACCAAGTCCTTTAGGACAAAGGCTTGTACATGTGATAATAGAATAGGGAAAATATTGGCTTCTAAATTTCAGAAAGTTGCTGAAAAATCAAAGGATGATATACTTTCTGACAGTGATGGAGATTTGAAGCGAACTTACTGCAGTAAGAAGAAGTGCTGTAAGCGGCAACGTTTACAGATGAATATTCCTTTCAAAAAGAGGAAGCTTTTTAGTTGTAGCTCCGTTTCAAATTCTAACAGATTTATCAGTAGTGGTGGCATTTATTATTCACCTGAGAATGGTATGAATCAAGGTGCATCTGATTCATCTCCTGGGATGCACAGAGTTCAAATTGTTGATGCAGACCCTGGAATATCATCCTTGGAGGCATGTCAACACCAGACATTACAATGTAGAAGCTCTCAGGTGAAGCTTAGGATCAAGTCATTTAGAGTGCCAGAGCTTTTTATTGAGGTTCCAGAAACTGCAACCGTTGGGTCGTTGAAGAGGACAGTGATGGATGCTGTGACTGCTGCACTTGGGGGAGGATTACACATTGGTGTCATTCTCCAGGGAAAGAAAGTTAGAGATGACAGTAAAACTCTACTTCAAACTGGAATTTCTCATAATAACCAGCTGGATGCTTTGGGTTTCACCCTGGAGCCTAATTCTTCGCAAAGCCTACCGATTGTATGTGCTGCACATCCTCCCCATGTTCCTAATGCAGACATTCCTCAGCCTCCAATAAGGTATCCTTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGAAATTCTGCCGTGTTACCTGAGCATCAAACAACCAGTTTAAGTAACCTTGTTGAAGGTGACCATGATTCAGCTCCTTCAACTATCAATGCATCTGTTGACAAAGGTAGGACAGATTCCAAAGAATTGGTTACTGTTCCTGAAATGGATAAGGAGGAACTAGCCATGGTAACTGTACTTCAGAAGTCAAAGAGATCTGAGATTATGCAGCGCCGGATTCGTAGGCCTTTCTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAGAAACTGGGAACTGGAAGGTGGCGGGATGTTAAACTTCTTGCTTTTGATAACGCAGAACATCGAACATATGTTGATTTGAAGGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAGGCTGTTCCCCAAGACCTTCTGGATAGGGTCCTAATTGCCCATGCATATTGGTCCCAGCAACAGCACTCGGAAACTGTCTTATTTAATAAGGGATTGTCACCGGCACATGGCTTTGTAGATGGGGTTGGTGTTTTGGTTTCTGATTTTTGTTAA 2124 0.4124 MVLQKRLDYGFNGYRAPATPQSIRSTRRRSKFQRRAEDNQMCAFDLLATVAGKLLQEKENTTMYSDTSSEKDQHGSVEESQDANKSFKAEVSDEGSCDKKCFSLLSSQTNNQFSPLKELPHPEVDGHSGIASTVTGSSYSERFDAEKLMDGKSHNKKENDTSKVKLDSSGYPVDSSFKLDVDTSKVKDELHKFEKVPIGNGTEMCSFEDLLNENPPALISGNAKFSGYNDRIQCSSLSRGCDNVPIVSRDDDENSSGCTHPSTKTKSFRTKACTCDNRIGKILASKFQKVAEKSKDDILSDSDGDLKRTYCSKKKCCKRQRLQMNIPFKKRKLFSCSSVSNSNRFISSGGIYYSPENGMNQGASDSSPGMHRVQIVDADPGISSLEACQHQTLQCRSSQVKLRIKSFRVPELFIEVPETATVGSLKRTVMDAVTAALGGGLHIGVILQGKKVRDDSKTLLQTGISHNNQLDALGFTLEPNSSQSLPIVCAAHPPHVPNADIPQPPIRYPSSPAVIHQRIQGNSAVLPEHQTTSLSNLVEGDHDSAPSTINASVDKGRTDSKELVTVPEMDKEELAMVTVLQKSKRSEIMQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKLLAFDNAEHRTYVDLKDKWKTLVHTARISPQQRRGEAVPQDLLDRVLIAHAYWSQQQHSETVLFNKGLSPAHGFVDGVGVLVSDFC. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03868 707 MobiDBLite consensus disorder prediction 538 558 - -
Seca4g03868 707 MobiDBLite consensus disorder prediction 113 136 - -
Seca4g03868 707 ProSiteProfiles Myb-like domain profile. 589 644 IPR001005 -
Seca4g03868 707 MobiDBLite consensus disorder prediction 61 89 - -
Seca4g03868 707 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 679 IPR031105 -
Seca4g03868 707 CDD SANT_TRF 595 645 - -
Seca4g03868 707 SMART sant 593 646 IPR001005 -
Seca4g03868 707 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 589 648 IPR017930 -
Seca4g03868 707 MobiDBLite consensus disorder prediction 538 554 - -
Seca4g03868 707 MobiDBLite consensus disorder prediction 71 89 - -
Seca4g03868 707 SUPERFAMILY Ubiquitin-like 397 483 IPR029071 -
Seca4g03868 707 Gene3D - 582 684 - -
Seca4g03868 707 SUPERFAMILY Homeodomain-like 595 676 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03868 Seca-Chr4 68083289 68087915 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03868 - - gmx:100797436 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03868 4 68083289 68087915 Seca4g03868 4 68083289 68087915 ECH
Seca4g03868 4 68083289 68087915 Seca8g01053 8 15134182 15137952 ECH