Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01050 ATGCCTTTCATTTCCAAAATTAAGCGTCAATCCGATTACAGTCTCTTCAGTTCCTCCACTCCTATCGTTATCGATAATGGCGCCTCCTATTTCCGCATCGGATGGGCAGGAGAGACTGAACCCCGTGTTATCTTCCGCAACATTGTGCAAAGACCACGCCATAAAGTAACAGATTCTACTAACAACACAGGGGAAACTGTCACTATTGTGGGTGACCATGATCCTGCCTTACTCAAATACTTTGACTGCACTCGCTCAGGGCCACGCTCTGCATTTGACAATAATGTTGTTTACCAGTTTGAAACAATGGAATATATTCTTGATTTTGGATTTGACCGTATGGGTGCGGAAGGAACGGAGATTGATCATCCTGTCCTCATCACAGAATGTGTGTGCAACCCAGTTCAATCTCGTAGTAAAATGGCAGAGCTTCTTTTTGAGACTTATGGAGTTTCGTCAATAGCCTTTGGTGTTGATACGGCATTCAGCTATAAATATAATCAACAGCATGGGGTTTGTGCTAAAGATGGTCTGGCTTTGTGTCCTGGATTCACCACAACCCATGTGATTCCGTTTGTAGATGGGGAGCCCATTTATAAAGGATGCTGCCGAACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTCATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAAATGGAACATTGTTACATTGCACCAGATTATGTTTCTGAATCTCGGTTGTTTAAGAATGGAGCCAAGGAGGCTGAAGAAAAAACGATATGTTGGCAACTCCCCTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAGAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCTGAGGCGAAGAGATCATCTAAAATAAATGAACTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTGCACCAGCTTGATCAAGTGGAGGAGAGTGATGTTCCATCTTTCCTGGCAGATACTGGCTATGTCTCTAAGCAGGAGATAGAATCTGCACGTAACAAAGTTACACAATCTTTACGGAAAGTGAAAGGTGAACCAAAGAATGAACAAGATGAAAATGAAAAGGCTGATCTTTCCACCAACGAGAAGTATTCTCTTATAAACATCCCAGACGACATGTTGACCCCAGAACAGATCAATGAAAAGAAGAAACAATTGTCACTCAAATCCATGTCTGAAGGGCGGCAGCGATTAAAACAGAAGCGTTATGAAGAGGAATTGGAAAGAGAGAGGCAACAACAGCTAGAGGAGGAGAAACGCCTAGAAAACCCGGAGCTTTACTTGGAACAATTGCATGCTAGATACAAAGACCTTTCAGATAAAGTTGACCAACAAAAACGACTCAAGACAAATGGAGGCTATGCAAGTGGAAATAATTTGTCTGGTGGTGTTGGCCGTGGTGAGAGACTGAATGCTGCTCAAAGGGAACGAATGCGCCTATTGACAACTGCAGCTTTTGATCGTGGTAAGGGTGAGGATACATTTGGTGCCAGAGATGAAGATTGGGAACTGTACAAAATGATGAGCAAAGATAATAACGACGATGATGAGGGACCTGATGAGGATGAGGCAGAGCTGGCCCGCATCTCTTCCAGGCTCCAAGACTTGGATCCAACATTTGTACCAAAGTTAGAAGTCAGTACCTCTCAACCTGCCGAGGTACCTCGTATTCGTCCTCTTACCAAAGAAGATTTTCAGATTGTTCTTGGGGTTGAAAGATTCAGATGCCCTGAGATATTGTTTAATCCAAACTGGATTGGGATTGATCAGGTAGGATTAGATGAGATGGCTGGGGTCTCAATAAGGAGGTTACCATACAAGAATCAAAGCTTGGAAGAGAGACTAACTAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGTATAGTTGAACGCCTGGAAGCTGGAATTCGAATGATTAGACCATGTGGATCACCTATAAACATAGTTAGAGCATTGGATCCTGTCATGGATGCATGGCGTGGAGCTGCTTCCTATGCATCAGCGTCACAGTTCCATACTCAAACTTTCAGTAGATTGGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAGTTATCAACTGCAATATACATTATAA 2187 0.4271 MPFISKIKRQSDYSLFSSSTPIVIDNGASYFRIGWAGETEPRVIFRNIVQRPRHKVTDSTNNTGETVTIVGDHDPALLKYFDCTRSGPRSAFDNNVVYQFETMEYILDFGFDRMGAEGTEIDHPVLITECVCNPVQSRSKMAELLFETYGVSSIAFGVDTAFSYKYNQQHGVCAKDGLALCPGFTTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSLKYPHHLARFTWEKVEDLKMEHCYIAPDYVSESRLFKNGAKEAEEKTICWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELHGLEFLLHQLDQVEESDVPSFLADTGYVSKQEIESARNKVTQSLRKVKGEPKNEQDENEKADLSTNEKYSLINIPDDMLTPEQINEKKKQLSLKSMSEGRQRLKQKRYEEELERERQQQLEEEKRLENPELYLEQLHARYKDLSDKVDQQKRLKTNGGYASGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGARDEDWELYKMMSKDNNDDDEGPDEDEAELARISSRLQDLDPTFVPKLEVSTSQPAEVPRIRPLTKEDFQIVLGVERFRCPEILFNPNWIGIDQVGLDEMAGVSIRRLPYKNQSLEERLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPINIVRALDPVMDAWRGAASYASASQFHTQTFSRLDYYEKGEDWLRSYQLQYTL. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01050 728 Coils Coil 455 475 - -
Seca8g01050 728 MobiDBLite consensus disorder prediction 364 386 - -
Seca8g01050 728 FunFam Putative actin-related protein 5 688 716 - -
Seca8g01050 728 Coils Coil 422 451 - -
Seca8g01050 728 Pfam Actin 593 720 IPR004000 -
Seca8g01050 728 Pfam Actin 19 259 IPR004000 -
Seca8g01050 728 Gene3D - 17 177 - -
Seca8g01050 728 Gene3D - 618 687 - -
Seca8g01050 728 Gene3D Actin; Chain A, domain 4 209 263 - -
Seca8g01050 728 Coils Coil 315 335 - -
Seca8g01050 728 FunFam ARP5 actin-related protein 5 homolog 618 687 - -
Seca8g01050 728 Gene3D - 688 716 - -
Seca8g01050 728 Gene3D - 180 208 - -
Seca8g01050 728 MobiDBLite consensus disorder prediction 364 390 - -
Seca8g01050 728 FunFam actin-related protein 5 158 212 - -
Seca8g01050 728 SUPERFAMILY Actin-like ATPase domain 18 165 IPR043129 -
Seca8g01050 728 SUPERFAMILY Actin-like ATPase domain 176 721 IPR043129 -
Seca8g01050 728 FunFam Actin-related protein 5 209 263 - -
Seca8g01050 728 MobiDBLite consensus disorder prediction 410 432 - -
Seca8g01050 728 Gene3D Actin; Chain A, domain 4 526 617 - -
Seca8g01050 728 CDD NBD_sugar-kinase_HSP70_actin 22 208 - -
Seca8g01050 728 SMART actin_3 19 724 IPR004000 -
Seca8g01050 728 PANTHER ACTIN 21 716 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01050 Seca-Chr8 15121870 15126750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01050 594 715 Miscellaneous Gene Families AT2G42100 31.967 4.99e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01050 K11672 - gmx:100804305 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01050 8 15121870 15126750 Seca8g01050 8 15121870 15126750 ECH
Seca8g01050 8 15121870 15126750 Seca6g02279 6 84127285 84137552 PCT