Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02279 ATGCCTTTCATCTCGAAAATTCAGCGCCAATCTGATTTCAATCTCTTCAGTTCCGGCACTCCCATCGTGATCGACAATGGCGCCTCCTATTTCCGTATTGGGTGGGCTGGAGAGACTGAACCCCGAGTTGTTTTCCGCAACATTGTCCAAAGGCCACGCCATAAAACCACTGGAGAAACTGTCACTATTGTTGGTGATCATGATCCAGCATTACTGAAATACTTTGATTGCACTCGCTCTGGACCACGCTCAGCATTTGACAGCAATGTTGTTTACCAGTTTGAAATAATGGAATATATTCTGGACTTTGGATTTGACCGGATGGGTGCAAAAGGACCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTCAGTCTCGTAGTAAAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTAGATGCGGCATTCAGCTATAAATATAATCAACAACAAGGTGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCACTACAACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATTTATAAAGGAAGCTGTCGTACCAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAGCTTCTTTCACTTAAATATCCTTATCATTTGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGCTATATTGCACAACACTACGCTTCTGAAGCTCGATTATTTCAGAAAGGAGCCAAGGAGGCTGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCTAGAATAAATGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTAAATCAACTTGAACAAGTTGAAGAGAGTGATATTCCATCTTTCCTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAATAGAATCTGCCCGTAGTAAAGTTATGCAATCCTTACGGAAAGCAAAAGGTGAACCGAAGGGTGAACAAACTGAAACTGAAAAGGCTGACCCTGCCGCTAATGAGAAGTATTCTCTTATAAACATCCCTGACGACATGCTGACCCCAGACCAGCTCATTGAAAAGAAGAAACAGTTGTCACTCAAATCCATGTCTGAAGGACGACAGCGATTAAAGCAGAAGCGTCATGAAGAGGAATTGGAAAGAGAAAGGAAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCAGAACTTTACTTGGAGGAGTTGCGTGCTAGATACAAAGACCTTTCAGAGAAAGTTGATCAACGAAAACGGCTCAAGACGAATGGAGGCCATACAAATGGAAATAATCTGTCTGGTGCTGTTGGTCGTGGTGAAAGGCTCAATGCTGCTCAGAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGTGAGGACACATTTGGTGCCAGCGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGATGATGATGAGGGACCAGATGAAGATGACTTAGAGCTAGCCCGCATCTCTTCAAGGCTTCAGGGCTTGGATCCAACATTTGTGCCCAAGGCAGAAACAGGTAGCACTCAACCTGCTGAGGTGCCACGCGTTCGTCCTCTCACCAAAGAAGATTTTCAGATTATTTTTGGGGTAGAAAGGTTCAGATGCCCTGAAATTTTGTTCAATCCAAACTGGGTTGGGGTTGATCAGGTAGGACTAGATGAGATGGCTGGGGTCTCAATAAGAAGGTTGTCATGTAAGGATGAAAAACTGGAAGAGAGACTGACAAATTCCATACTTGTGACTGGTGGAAGTTCTCTTTTCCCTGGCATCGTTGAACGCTTGGAAGCTGGAATTCGGATGATTAGACCCTGTGGATCACCTATAAAAATAGTTAGAGCACTGGATCCAGTTATGGATGCATGGCGCGGTGCTTCTGTTTATGCATCAACTCCAGGATTTCATACTCAAACTTTCAAAAAACAAAAGAAGAAATTGCAGAAAATGGAGTCACCTCAGGCCAGGAAATCAGGGCTGAACCTCCCAGCTGGGATGTCAGGAACCTCACTACGCCTTGACACATTCTCTGCATCTTCTTCTTCCACATGCAGTGACAGGTTCATACCCTGTAGATCATCTTCAAGGCTTCACACTTTTGGCCTCATTGAGAAGCCATCACCGGTCAAAGAAGGGAGTAACGAGGCTTATTCCAGGTTATTGAAATCTGAGCTTTTTGGATCTGACTTTGTCTCTCCTTCTCCTTCTTCTTCTTCCCCTAGTCCCAGCAAGAACATGCTCCGCTTCAAAACTGATCATTCTGGACCTTCCTCCCCTTTTTCTCCCTCCATTTTAGGCCACCAATCTGGCCTCTCTTCAGAGACTTCAACCCCTCCAAAGCCTCCTCGGAAAGTCCCCAAGACACCCCACAAGGATTTGCATTGGATTTTGGAATGTTGGTTGCTGAAACTGGAAAAGCTTGTGCAGGTTCTGGATGCCCCTTCACTTCAAGATGACTTTTACTTGAATCTGGTGGACTGGTCCTCACAGAATGTTCTTGCTGTGGGGCTAGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTGACAAAGCTATGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAATGGACCCGGGAGGGTTCTTTCATATCCATTGGTACAAATCTTGGGCAAGTTCAGATTTGGGATGGAACTCAGTGTAAGAAAGTGAGAACAATGAGTGGACATCAGACAAGAACTGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGCAGGGATAGGAACATACTTCAGCATGACATGAGAGTTTCAAGTGACTTTGTTAGCAAGCTTGTTGGCCACAAGTCTGAGGTATGTGGCTTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCTTGGTTTGGAATCAGCACTCTCAACAACCAGCATTGAGACTCACAGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAGAGTGGCCTCCTTGTGTCTGGAGGTGGAACAGCTGATAGGTGCATCCGTTTCTGGAACACTACAAATGGCCATCAATTGAACTGTGTTGACACTGGGAGCCAGGTATGCAACCTTGTTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGATACTCCCAAAATCAGATTATGGTGTGGAAATATCCATCACTAACAAAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTGCTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACACTGCGGTTTTGGAATGTTTTTCCATCAATGAAAACACCTACCCCAGTTAAAGATACTGGCCTTTGGTCACTGGGGCGCACCCAAATTCGATGA 3561 0.4493 MPFISKIQRQSDFNLFSSGTPIVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKTTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFEIMEYILDFGFDRMGAKGPEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLAMCPGFTTTHVIPFVDGEPIYKGSCRTNIGGFHVTDYLKQLLSLKYPYHLARFTWEKVEDLKMEHCYIAQHYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSRINELENELHGLEFLLNQLEQVEESDIPSFLAETGYVSRQEIESARSKVMQSLRKAKGEPKGEQTETEKADPAANEKYSLINIPDDMLTPDQLIEKKKQLSLKSMSEGRQRLKQKRHEEELERERKQQLEEEKRLENPELYLEELRARYKDLSEKVDQRKRLKTNGGHTNGNNLSGAVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGASDEDWQLYKLMSKDNDDDDEGPDEDDLELARISSRLQGLDPTFVPKAETGSTQPAEVPRVRPLTKEDFQIIFGVERFRCPEILFNPNWVGVDQVGLDEMAGVSIRRLSCKDEKLEERLTNSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASVYASTPGFHTQTFKKQKKKLQKMESPQARKSGLNLPAGMSGTSLRLDTFSASSSSTCSDRFIPCRSSSRLHTFGLIEKPSPVKEGSNEAYSRLLKSELFGSDFVSPSPSSSSPSPSKNMLRFKTDHSGPSSPFSPSILGHQSGLSSETSTPPKPPRKVPKTPHKDLHWILECWLLKLEKLVQVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQIWDGTQCKKVRTMSGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFVSKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPSLTKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPTPVKDTGLWSLGRTQIR. 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02279 1186 FunFam Actin-related protein 5 203 257 - -
Seca6g02279 1186 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Seca6g02279 1186 Coils Coil 409 445 - -
Seca6g02279 1186 SUPERFAMILY Actin-like ATPase domain 20 159 IPR043129 -
Seca6g02279 1186 CDD WD40 902 1161 - -
Seca6g02279 1186 SUPERFAMILY Actin-like ATPase domain 170 703 IPR043129 -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 465 487 - -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 356 382 - -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 406 440 - -
Seca6g02279 1186 Pfam Actin 20 268 IPR004000 -
Seca6g02279 1186 Pfam Actin 587 703 IPR004000 -
Seca6g02279 1186 Gene3D - 591 677 - -
Seca6g02279 1186 Pfam Eukaryotic translation initiation factor eIF2A 1025 1159 IPR013979 -
Seca6g02279 1186 Gene3D - 18 170 - -
Seca6g02279 1186 FunFam Actin-related protein 5 18 170 - -
Seca6g02279 1186 ProSitePatterns Trp-Asp (WD) repeats signature. 1148 1162 IPR019775 -
Seca6g02279 1186 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 718 1168 IPR033010 GO:0010997|GO:0097027|GO:1904668
Seca6g02279 1186 ProSiteProfiles Trp-Asp (WD) repeats profile. 999 1040 IPR001680 GO:0005515
Seca6g02279 1186 SMART WD40_4 1034 1076 IPR001680 GO:0005515
Seca6g02279 1186 SMART WD40_4 864 905 IPR001680 GO:0005515
Seca6g02279 1186 SMART WD40_4 908 948 IPR001680 GO:0005515
Seca6g02279 1186 SMART WD40_4 1122 1161 IPR001680 GO:0005515
Seca6g02279 1186 SMART WD40_4 992 1031 IPR001680 GO:0005515
Seca6g02279 1186 SMART WD40_4 951 988 IPR001680 GO:0005515
Seca6g02279 1186 Gene3D Actin; Chain A, domain 4 201 292 - -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 356 380 - -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 790 849 - -
Seca6g02279 1186 ProSitePatterns Trp-Asp (WD) repeats signature. 1063 1077 IPR019775 -
Seca6g02279 1186 SUPERFAMILY WD40 repeat-like 877 1162 IPR036322 GO:0005515
Seca6g02279 1186 SMART actin_3 19 719 IPR004000 -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 790 838 - -
Seca6g02279 1186 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 999 1031 - -
Seca6g02279 1186 Coils Coil 449 469 - -
Seca6g02279 1186 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1129 1162 - -
Seca6g02279 1186 Coils Coil 309 332 - -
Seca6g02279 1186 Gene3D - 864 1165 IPR015943 GO:0005515
Seca6g02279 1186 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Seca6g02279 1186 MobiDBLite consensus disorder prediction 706 726 - -
Seca6g02279 1186 ProSiteProfiles Trp-Asp (WD) repeats profile. 1129 1162 IPR001680 GO:0005515
Seca6g02279 1186 FunFam FIZZY-related 2 isoform 1 865 1164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02279 Seca-Chr6 84127285 84137552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02279 585 695 Miscellaneous Gene Families AT2G42100 35.714 6.52e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02279 K11672 - gmx:100808396 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02279 6 84127285 84137552 Seca6g02279 6 84127285 84137552 ECH
Seca8g01050 8 15121870 15126750 Seca6g02279 6 84127285 84137552 PCT