Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01009 ATGGATAATGGCGAGATAAGTGAAGGAGGAGCTGAGGCTGAGGTGGCATTGCAAGGCCACGGCCGCAATGTGCTGTATATGTGGGGATACCTTCCAGGAGCTATGCCGCAGAGGACGCCGCTCTTGTCGCCGGTTGCCGTTACGTTTTCGGCGTCCTGGAAGGACGTTTGCGGTGGTGGCTGTGGATTCGCCATGGCTATCTCTGAGTCAGGGAAGCTCATCACATGGGGCTCAGCAGATGATCTAGGCCAAAGCTATGTGACCTCAGGCAAGCACAGGGAAACTCCAGAGCCTTTTCCCCTTCCAACTGAAGACTCTATTGTTAAAGCTGCAGCTGGATGGGGTCATTGTGTTGCTACAACAGGTAAAGTTTTCTTCCTAGTGTCAAACCCTACAAATATGTTTTTCTGTTTCTTTGCAGAACGTGGAGAAGTTTACACATGGGGATGGAAAGAATGTATTCCCGCTGGGAAGGTATTTGGTGAACAACCAACAGGGGTAAGTCTTGAAAAAGATGTGGCAGGGAAGCAGAGTACATTGTCGACAGAGCAAGTGAGCCCTCGTTCTCAAAGCTCAAGATCTACTGGAGTTATTGCCTCCAGTAACAGTGGAGAAGAAAGCACAAAGCGGAGGAGAGTATCTTCAGCAAAACAACCAGCTGAAAGCTCTTCATCCAGTGATGATACTCTGACAGCATTTCCTTGCCTAGTTACACTAAACCCAGGGATAAGGATAGCTAATGTTGCTGCTGGTGGACGCCATACCCTAGCATTGTCAGATACAGGACTGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTCTGGGTTCCAGAATACGTATGGTTTCGACTCCTCATCCTGTGCCTTGTATTGATTCCTCTTCTTATGGTAAAGATAGATCTATAATATTGGCTCGAGGATGCATGGGTTCAGAAGGCCGGAATTTTAGAGTTCCTGGAAGTTATGTAAAGAGAATTGCTTGTGGAGGTCGACACAGTGCTGTAATTACAGATGCTGGAGCGTTGCTCACTTTTGGTTGGGGACTATATGGACAGTGTGGGCAAGGAACTACAGATGATGAACTAAGCCCGACTTGTGTATCTTCCTTGTTGGGTATCCAAATAGAGGGAGTTGCTGCAGGACTATGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCGTTTGGTGGGAATCAGTTTGGGCAGCTGGGAACTGGTGCTGACCAAGCTGAGACTCTACCAAGACTAGTGGATTCTCCGAGCTTGGAAAATATGCATGCAAAGAACATATCTTGTGGTGCTCGTCATACTGCTTTAATAACAGAGGGTGGAAAAGTCTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGCCTTGGGGATGTGATTGACCGTAAAATTCCTTCTGAAGTCACCATTGAAGGTTGTGTCCCTAAAAATGTTGCTTGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCACCAACTTGA 1503 0.4804 MDNGEISEGGAEAEVALQGHGRNVLYMWGYLPGAMPQRTPLLSPVAVTFSASWKDVCGGGCGFAMAISESGKLITWGSADDLGQSYVTSGKHRETPEPFPLPTEDSIVKAAAGWGHCVATTGKVFFLVSNPTNMFFCFFAERGEVYTWGWKECIPAGKVFGEQPTGVSLEKDVAGKQSTLSTEQVSPRSQSSRSTGVIASSNSGEESTKRRRVSSAKQPAESSSSSDDTLTAFPCLVTLNPGIRIANVAAGGRHTLALSDTGLVWGWGYGGEGQLGLGSRIRMVSTPHPVPCIDSSSYGKDRSIILARGCMGSEGRNFRVPGSYVKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIQIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSPSLENMHAKNISCGARHTALITEGGKVFCWGWNKYGQLGLGDVIDRKIPSEVTIEGCVPKNVACGWWHTLLLAESPT. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01009 500 Gene3D - 9 176 IPR009091 -
Seca8g01009 500 Gene3D - 312 500 IPR009091 -
Seca8g01009 500 SUPERFAMILY RCC1/BLIP-II 25 498 IPR009091 -
Seca8g01009 500 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Seca8g01009 500 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 51 496 - -
Seca8g01009 500 MobiDBLite consensus disorder prediction 172 204 - -
Seca8g01009 500 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 248 258 IPR000408 -
Seca8g01009 500 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 71 123 IPR000408 -
Seca8g01009 500 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 328 338 IPR000408 -
Seca8g01009 500 Gene3D - 194 311 IPR009091 -
Seca8g01009 500 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 341 IPR000408 -
Seca8g01009 500 PRINTS Chromosome condensation regulator RCC1 signature 245 258 IPR000408 -
Seca8g01009 500 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Seca8g01009 500 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Seca8g01009 500 PRINTS Chromosome condensation regulator RCC1 signature 488 500 IPR000408 -
Seca8g01009 500 PRINTS Chromosome condensation regulator RCC1 signature 396 410 IPR000408 -
Seca8g01009 500 Pfam Regulator of chromosome condensation (RCC1) repeat 245 274 - -
Seca8g01009 500 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 434 444 IPR000408 -
Seca8g01009 500 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 447 IPR000408 -
Seca8g01009 500 MobiDBLite consensus disorder prediction 172 228 - -
Seca8g01009 500 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 498 IPR000408 -
Seca8g01009 500 Pfam Regulator of chromosome condensation (RCC1) repeat 342 389 IPR000408 -
Seca8g01009 500 Pfam Regulator of chromosome condensation (RCC1) repeat 393 444 IPR000408 -
Seca8g01009 500 Pfam Regulator of chromosome condensation (RCC1) repeat 448 495 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01009 Seca-Chr8 14102176 14110079 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01009 - - gmx:100807837 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01009 8 14102176 14110079 Seca8g01009 8 14102176 14110079 ECH
Seca8g01009 8 14102176 14110079 Seca6g02237 6 83298152 83304447 ECH
Seca8g01009 8 14102176 14110079 Seca6g02237 6 83298152 83304447 PCT