Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02237 ATGAATGGCGAGGGGAGTGAAGCATTGCAAGGGGCGAAGGAGAGGTTGGTGTATATGTGGGGTTACCTACCGGGAGCTCTACCGCAGAGGACGCCGCTGTTGACGCCGGTACTCGTTAGGGTTCCGGCGTCCGGTTACTCCTGGAAGGATGTTTGCGGTGGTGGTTGTGGATTCGCCATGGCTATCTCTGAGCTAGGGAAACTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTAACGTCTGGCAAGCATGGGGAAATTCCAGAGCCTTTCCCTCTTCCAACTGAAGCTTCTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTGCTGCAACAGATTCTGGAGAAGTTTACACATGGGGATGGAAGGAATGTGTTCCCTCTGGGAAGGTATTTGGTGAACCGTCAACAGGGGTAAGTCCAGAAAAAGATGTACCAGGAAGGCAGAGTTCATTCTTGATGGAGCAAGTGAGCCCTCGATCTCAAGGCTCAAAATCCTCTGGAGGAACTGCCTCCAATACCAGTGGAGAAGAAAGTACAAAGAGAAGGAGAGTATCTTCAGCCAAGCAAACAGCTGAAACCTCATCATCTGGTGATGATATTCTGACAGCAATGCCGTGTCTTGTCACACTAAACCCAGGGGTAAGGATAGCAAGTGTTGCTGCTGGGGGACGCCATACCCTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCCAGAATACGGATGGTGTCATCTCCTCATCTTGTTCCTTGTATCGATTCCTCTTCTTATGGTAAAGATATATCGGCATCACTGGCTCGGGGAAGCTTGAGTTCAGAGGGACAAAATTCTAGAGTTCCTGGAAGTTATATTAAAGGTATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTACATTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTCAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCGAATAGAGGGAGTTGCTGCAGGATTGTGGCATACTGTCTGTACATCTTCTGATGGTGATGTATATGCATTTGGTGGAAATCAATTTGGGCAGCTGGGAACTGGTGCTGATCAAGCTGAGTTTTTGAGTGTTAACTTGAATTTTGAAACAGACTCTACCAAGGCTACTGGATTGTCCGAGCTTGGAAAATATGAACGTAAAGAGCATATCTTGTGGGGCTCGTCACACTGCTCTAATAACAGATTCTCATTAGTTCTTTTGTTTTTGTTTCTTCAAGATAATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTGGGCCTTGGGGATGTGATTGACCGTAACATTCCTTCTGAAGTGACCATAGAAGGTTGTGTAGCTAAAAACATTGCATGTGGTTGGTGGCACACTCTTCTTCTGGCCGAGTCACCCACTTGA 1497 0.4743 MNGEGSEALQGAKERLVYMWGYLPGALPQRTPLLTPVLVRVPASGYSWKDVCGGGCGFAMAISELGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEASIVKAAAGWAHCVAATDSGEVYTWGWKECVPSGKVFGEPSTGVSPEKDVPGRQSSFLMEQVSPRSQGSKSSGGTASNTSGEESTKRRRVSSAKQTAETSSSGDDILTAMPCLVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSSYGKDISASLARGSLSSEGQNSRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSSDGDVYAFGGNQFGQLGTGADQAEFLSVNLNFETDSTKATGLSELGKYERKEHILWGSSHCSNNRFSLVLLFLFLQDNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNIACGWWHTLLLAESPT. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02237 498 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 224 234 IPR000408 -
Seca6g02237 498 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 304 314 IPR000408 -
Seca6g02237 498 SUPERFAMILY RCC1/BLIP-II 17 496 IPR009091 -
Seca6g02237 498 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 496 IPR000408 -
Seca6g02237 498 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Seca6g02237 498 Gene3D - 146 424 IPR009091 -
Seca6g02237 498 MobiDBLite consensus disorder prediction 159 202 - -
Seca6g02237 498 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Seca6g02237 498 Pfam Regulator of chromosome condensation (RCC1) repeat 318 365 IPR000408 -
Seca6g02237 498 Pfam Regulator of chromosome condensation (RCC1) repeat 445 493 IPR000408 -
Seca6g02237 498 Pfam Regulator of chromosome condensation (RCC1) repeat 369 389 IPR000408 -
Seca6g02237 498 PRINTS Chromosome condensation regulator RCC1 signature 221 234 IPR000408 -
Seca6g02237 498 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Seca6g02237 498 PRINTS Chromosome condensation regulator RCC1 signature 372 386 IPR000408 -
Seca6g02237 498 PRINTS Chromosome condensation regulator RCC1 signature 486 498 IPR000408 -
Seca6g02237 498 PRINTS Chromosome condensation regulator RCC1 signature 240 256 IPR000408 -
Seca6g02237 498 Gene3D - 8 143 IPR009091 -
Seca6g02237 498 Gene3D - 425 498 IPR009091 -
Seca6g02237 498 MobiDBLite consensus disorder prediction 159 180 - -
Seca6g02237 498 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 317 IPR000408 -
Seca6g02237 498 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 45 494 - -
Seca6g02237 498 Pfam Regulator of chromosome condensation (RCC1) repeat 221 250 - -
Seca6g02237 498 Pfam Regulator of chromosome condensation (RCC1) repeat 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02237 Seca-Chr6 83298152 83304447 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02237 - - gmx:100778841 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01009 8 14102176 14110079 Seca6g02237 6 83298152 83304447 ECH
Seca6g02237 6 83298152 83304447 Seca6g02237 6 83298152 83304447 ECH
Seca8g01009 8 14102176 14110079 Seca6g02237 6 83298152 83304447 PCT