Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01005 ATGGCGGCTGTGGATCCTTCTCGCACTTTCCTCAAAGACGTTAAACGCATCGTCATCAAAGTTGGGACTGCTGTTGTTACCGGTCAAGATGGAAGATTGGCTGTTGGGAGATTAGGGACTCTCTGTGAGCAGATTAAGGAATTGAATTCCCTAGGATATGAGATTATTTTGGTGTCTTCCGGTGCTGTTGGTATTGGCCGCCAAAGGCTCAGATACAGGAAATTAATTAACAGCAGCTTTGCTGAGCTACAGAAGCCACAAGTTGAACTTGATGGCAAGGCATGTGCTGCCGTTGGACAAAACAGTCTTATGGCTCTTTATGATACTTTGTTCAGCCAACTCGACGTGACATCTGCTCAACTACTTGTGACAGACAATGATTTTAGAGATAAAGATTTTAGAATGCAACTTTCTGAAACTGTGAAATCATTGTTAGCACTAAAAGTCATCCCGGTATTCAATGAAAATGATGCTGTCAGTACTAGGAAAGCTCCATATGAGGTTTCCCATTTTCTGCAGGATTCTTCTGGTATATTTTGGGATAATGATAGTTTATCTGCTTTATTGGCCTTGGAGTTAAAGGCCGATCTTCTTGTTTTGTTGAGTGATGTTGAAGGTCTTTATAGTGGCCCTCCAAGTGACCCACATTCAAAGCTTATTCATACATATATTAAGGAAAAGCATCAGAATGAAATTACTTTTGGCGACAAGTCTAGGGTGGGAAGAGGTGGAATGACAGCCAAAGTAAAAGCTGCTGTTCATGCAGCTGAAGCTGGCATTCCTGTTATTATTACCAGTGGTTTTGCAGCTGAAAGTATCATTAACATTCTCCAAGGACAACGTAAAGGAACCCTTTTCCATAAAGATGCACATGAGTGGGCCCCATTAAAAGAGGTAGATGCACGGGAGATGGCTGTTGCAGCCAGGGAATGTTCCAGACGGCTTCAGGCATTATCTTCAGAAGAAAGGAAACAAATTTTACTAAAAATTGCTGATGCCCTGGAAGCAAATGAAAAAGTGATCAGGACTGAAAATGAAGCTGATATAACTGCTGCACAACAAGCAGGATATGAAAAATCCTTGGTGGCTAGGCTAGCTTTAAAACCTGGGAAGATTGAAAGCCTTGCGAACAACTTGCGAATTATTGCAAACATGGAAGATCCAATTGGCCGAGTATTAAAACAAACTGAGGTTTCAGATGGGCTAATTTTAGAGAAAACATCATCTCCTTTGGGAGTTCTCCTGATTGTTTTTGAGTCTCGCCCTGATGCACTAGTACAGATAGCTTCCCTGGCAATCCGAAGTGGGAATGGGCTTCTCTTGAAAGGAGGCAAGGAAGCTACGCGATCAAATGCAATTTTGCACAAAGTAATTACTGAAGCCATACCAGATTCTGTTGGTGGAAAACTTATTGGACTTGTGACCTCAAGAGCAGAAATCCCTGAACTACTTAAACTGGATGACGTGATTGATCTGGTGATTCCCAGAGGCAGCAATAAACTTGTTTCTCAGATCAAGAGTTCCACTAAAATTCCCGTTTTGGGTCATGCAGATGGAATTTGCCACATTTATGTTGATAAGTCTGCTGATAAGGAGATGGCAAGGCGGATTGTACTGGATGCAAAAATAGATTATCCAGCAGCCTGCAATGCCGTGGAAACACTTCTTGTCCACAAGGATTTAATAGAGAAAGGTTGGCTCAATGACATTATTGTTGATTTACGAACTGGAGGTGTTACGTTATATGGAGGACCAAAGGCAAGTTCTTTGTTAAATATTCCACAAGCACATTCATTTCATCATGAGTACAGTTCGTTGGCATGCACTGTTGAAATTGTGGATGATGTGTATGCAGCTATTGATCATATAAATCGTTATGGAAGTGCACATACTGATGCCATCATCACAGAAGATGACAAAGTAGCTGGTGTGTTTCTACGGCAAGTAGATAGTGCTGCTGTTTTTCACAATGCAAGCACAAGATTCTGTGATGGGGCACGATTTGGACTAGGCGCAGAGGTTGGAATAAGTACGAGCAGGATTCATGCTCGGGGTCCAGTTGGAGTTGAAGGACTGTTAACGACAAGATGGATTCTTAAAGGAAGTGGACAAGTAGTAGACGGTGATAGAGGGGTTGTCTACACCCACAGAGATCTTGCAGCTTGA 2166 0.4215 MAAVDPSRTFLKDVKRIVIKVGTAVVTGQDGRLAVGRLGTLCEQIKELNSLGYEIILVSSGAVGIGRQRLRYRKLINSSFAELQKPQVELDGKACAAVGQNSLMALYDTLFSQLDVTSAQLLVTDNDFRDKDFRMQLSETVKSLLALKVIPVFNENDAVSTRKAPYEVSHFLQDSSGIFWDNDSLSALLALELKADLLVLLSDVEGLYSGPPSDPHSKLIHTYIKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAAEAGIPVIITSGFAAESIINILQGQRKGTLFHKDAHEWAPLKEVDAREMAVAARECSRRLQALSSEERKQILLKIADALEANEKVIRTENEADITAAQQAGYEKSLVARLALKPGKIESLANNLRIIANMEDPIGRVLKQTEVSDGLILEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEATRSNAILHKVITEAIPDSVGGKLIGLVTSRAEIPELLKLDDVIDLVIPRGSNKLVSQIKSSTKIPVLGHADGICHIYVDKSADKEMARRIVLDAKIDYPAACNAVETLLVHKDLIEKGWLNDIIVDLRTGGVTLYGGPKASSLLNIPQAHSFHHEYSSLACTVEIVDDVYAAIDHINRYGSAHTDAIITEDDKVAGVFLRQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILKGSGQVVDGDRGVVYTHRDLAA. 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01005 721 ProSitePatterns Glutamate 5-kinase signature. 238 255 IPR019797 GO:0004349|GO:0006561
Seca8g01005 721 Hamap Gamma-glutamyl phosphate reductase [proA]. 300 706 IPR000965 GO:0004350|GO:0006561
Seca8g01005 721 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 518 664 IPR016163 GO:0016620
Seca8g01005 721 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 3 720 - -
Seca8g01005 721 NCBIfam delta l-pyrroline-5-carboxylate synthetase 8 719 IPR005766 GO:0003824|GO:0006561
Seca8g01005 721 SUPERFAMILY ALDH-like 300 705 IPR016161 GO:0016491
Seca8g01005 721 SUPERFAMILY Carbamate kinase-like 15 286 IPR036393 -
Seca8g01005 721 ProSitePatterns Gamma-glutamyl phosphate reductase signature. 613 635 IPR020593 GO:0004350|GO:0006561
Seca8g01005 721 Gene3D - 5 294 IPR036393 -
Seca8g01005 721 PIRSF P5C_synthetase 1 721 IPR005766 GO:0003824|GO:0006561
Seca8g01005 721 CDD ALDH_F18-19_ProA-GPR 302 702 IPR000965 GO:0004350|GO:0006561
Seca8g01005 721 FunFam Delta-1-pyrroline-5-carboxylate synthase 518 664 - -
Seca8g01005 721 Pfam Amino acid kinase family 15 266 IPR001048 -
Seca8g01005 721 NCBIfam glutamate 5-kinase 15 292 IPR005715 GO:0005737|GO:0006561
Seca8g01005 721 Pfam Aldehyde dehydrogenase family 297 564 IPR015590 GO:0016491
Seca8g01005 721 FunFam Delta-1-pyrroline-5-carboxylate synthase 291 410 - -
Seca8g01005 721 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 309 704 IPR016162 GO:0016491
Seca8g01005 721 PRINTS Glutamate 5-kinase family signature 52 66 IPR001057 GO:0005524|GO:0016301
Seca8g01005 721 PRINTS Glutamate 5-kinase family signature 240 260 IPR001057 GO:0005524|GO:0016301
Seca8g01005 721 PRINTS Glutamate 5-kinase family signature 136 157 IPR001057 GO:0005524|GO:0016301
Seca8g01005 721 PRINTS Glutamate 5-kinase family signature 96 124 IPR001057 GO:0005524|GO:0016301
Seca8g01005 721 PRINTS Glutamate 5-kinase family signature 181 208 IPR001057 GO:0005524|GO:0016301
Seca8g01005 721 Hamap Glutamate 5-kinase [proB]. 15 297 IPR005715 GO:0005737|GO:0006561
Seca8g01005 721 NCBIfam glutamate-5-semialdehyde dehydrogenase 308 695 IPR000965 GO:0004350|GO:0006561
Seca8g01005 721 FunFam Delta-1-pyrroline-5-carboxylate synthase 4 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01005 Seca-Chr8 14068333 14078402 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01005 K12657 - gmx:100809989 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01005 8 14068333 14078402 Seca8g01005 8 14068333 14078402 ECH
Seca8g01005 8 14068333 14078402 Seca6g02232 6 83251153 83257802 ECH
Seca8g01005 8 14068333 14078402 Seca6g02232 6 83251153 83257802 PCT