Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00950 ATGATGGAGGACGATAGAGGCGGCGCGTGTGCCAGGATGAGCACGAGGCTTTCTGACGTCGTGCTTGATTGCGTCATGCCGTACATCCACGACCCTAAGGACCGTGACGCGGTGTCTCAGGTGTGCCGCCGGTGGTATGAGCTGGACTCGCTCACGCGCAAGCACGTGACGATTGCGCTTTGTTACACAACCACACCGGATAGGCTTAGACGACGGTTTCCTCACCTTGAGTCGCTGAAGCTCAAGGGGAAACCTAGAGCAGCTATGTTCAACTTGATTCCTGAAGATTGGGGAGGGTTTGTTACCCCTTGGGTTAAAGAGATTTCACAGTATTTCGATTGCTTGAAGTCCCTTCACTTTCGACGCATGATTGTTACCGACTCCGATCTTCAGCTTCTAGCACGTTCCAGGGGTCATATCCTTCAAGCACTTAAGCTTGATAAGTGTTCTGGATTCTCCACCGATGGCCTTTACTTTATTGGTCGCTTTTGCAAGAATTTAAGAATATTGTTTATGGAGGAAAGCTCAGTTGTGGAGAATGATGGTAAGTGGCTCCATGAGCTTGCTTTGAATAATACAGTTCTTGAGACACTGAACTTTTACTTGACTGATATTGCCAACGTCAGAATTGAGGACCTAGAACTTATTGCCAAAAACTGCCCCAACTTAGTCTCTGTAAAAATTACTGATTGTGAAATCTTGGATCTGGTAAACTTCTTTCGATATGCAACTGCTCTAGAAGAATTTTGTGGAGGTTCCTACAATGAGGAACCGGAGAAGTACGCTGCTGTATCGTTACCATCTAAGTTAAGTCGATTGGGTTTGACATATATTGGAAAGAATGAAATGCCAATTGTGTTCCCTTATGCCGCCCTACTGAAAAAATTGGATCTTCTCTATGCCATGTTGGATACAGAGGATCATTGTACTTTAATCCAAAGGTGTCCCAACTTGGAAGTCCTTGAGTCCAGGAATGTAATTGGAGACAGAGGATTGGAAGTACTGGCACGATGTTGCAGGAGGCTGAAAAGGCTTAGGATTGAACGAGGTGATGACGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCCCAGAGAGGACTAATTGCCTTGTCACAAGGCTGTCCAGAACTTGAATATTTGGCTGTTTATGTATCTGACATTACAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTAGACCGTGAGGAGAAAATTACCGATTTGCCACTTGACAACGGAGTGAGGGCTTTACTGAGGGGTTGTGACAAGCTTAGAAGGTTTGCTCTGTATCTCAGACCTGGGGGCTTGACCGATGTGGGCCTCGGTTACATAGGGCAATACAGTCCAAACGTGAGATGGATGCTTCTTGGTTATGTGGGGGAGACTGATGCAGGGCTTTTGGAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAACTTGAAATGAGGGGGTGTTCCTTTTTCAGTGAGTATGCACTAGCTGTTGCTGCAACTAGACTAACATCTCTGAGGTATCTATGGGTACAAGGGTATGGAGCATCTCCATCTGGGGGTGATCTTTTGGCAATGGCTCGCCCTTATTGGAATATTGAGTTGATTCCTTCTAGACGCGTGGTTGTTAACAACCACCCAGAAGAACCTGTAGTTGTTGAGCATCCAGCTCACATTCTTGCATATTACTCCCTTGCTGGGCCAAGATCAGATTTTCCAGATACTGTTATACCTTTGGATCCTGCAGCAGCATATGTTGAGACGTAA 1791 0.4567 MMEDDRGGACARMSTRLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVKEISQYFDCLKSLHFRRMIVTDSDLQLLARSRGHILQALKLDKCSGFSTDGLYFIGRFCKNLRILFMEESSVVENDGKWLHELALNNTVLETLNFYLTDIANVRIEDLELIAKNCPNLVSVKITDCEILDLVNFFRYATALEEFCGGSYNEEPEKYAAVSLPSKLSRLGLTYIGKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALSQGCPELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLTSLRYLWVQGYGASPSGGDLLAMARPYWNIELIPSRRVVVNNHPEEPVVVEHPAHILAYYSLAGPRSDFPDTVIPLDPAAAYVET. 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00950 596 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 17 238 - -
Seca8g00950 596 Gene3D - 2 53 - -
Seca8g00950 596 SUPERFAMILY F-box domain 14 53 IPR036047 GO:0005515
Seca8g00950 596 FunFam Coronatine-insensitive protein 1 54 590 - -
Seca8g00950 596 SMART LRR_CC_2 485 510 IPR006553 -
Seca8g00950 596 SMART LRR_CC_2 433 459 IPR006553 -
Seca8g00950 596 SMART LRR_CC_2 375 399 IPR006553 -
Seca8g00950 596 SMART LRR_CC_2 112 136 IPR006553 -
Seca8g00950 596 SMART LRR_CC_2 315 338 IPR006553 -
Seca8g00950 596 Pfam F-box 15 55 IPR041567 -
Seca8g00950 596 SUPERFAMILY RNI-like 92 522 - -
Seca8g00950 596 FunFam F-box/LRR-repeat protein 4 14 53 - -
Seca8g00950 596 CDD F-box_AtTIR1-like 16 53 - -
Seca8g00950 596 Gene3D Ribonuclease Inhibitor 54 591 IPR032675 -
Seca8g00950 596 Pfam Transport inhibitor response 1 protein domain 74 120 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00950 Seca-Chr8 13081873 13086053 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00950 K13463 - gmx:100793081 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00950 8 13081873 13086053 Seca8g00950 8 13081873 13086053 ECH
Seca8g00950 8 13081873 13086053 Seca6g02153 6 81815305 81819069 PCT