Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02153 ATGATGGGGGATCGGAACGTGAGGAGGAACCGCGTCGTCGACGTGGTTCTTGACTGCGTCATACCTTATATCCATGACCCAAAAGACCGTGACGCGGTTTCTCAGGTGTGCCGGCGGTGGTACGAGCTTGACTCGTTGACCAGGAAGCACGTGACGATTGCTCTGTGCTACACCACCACGCCGGCGAGGCTCCGGCGGCGGTTCCCTCACCTGGAGTCGCTGAAGCTGAAGGGGAAACCGAGGGCGGCGATGTTCAACTTGATTCCCGAGGATTGGGGAGGTCACGTGACGCCTTGGGTTAGAGAGATTTCACAGTATTTTGATTGCCTCAAGAGTCTTCATTTTCGCCGTATGATCGTCAATGATTCCGATCTTCAGCTTCTTGCTCGGTCACGTGGTCACGTGCTTCAAGCTCTTAAGCTTGATAAGTGTTCTGGGTTTTCTACAAGTGGCCTTTACTATATTGGTCGTTTTTGCAGGAATTTAAGAGTCTTGTTGCTGGAGGAAAGCACGATTTTTGAGAAAGATGGCGATTGGCTACATGAGCTTGCTTTGAATAATACAGTTCTTGAGACTCTGAATTTTTACTTGACAGATATTGCTGATGTCAAAATTCAGGACCTTGAACTTCTAGCAAAAAATTGCCCCAACCTAGTGTCTGTGAAAATTACTGATTGTGAAATCTCGCATCTTGTGAACTTCTTCCGGAATGCCACTGCTCTGGAAGAATTTTGTGGAGGCACATACAATGAGGAACCAGAAAGATATGCTGCTGTAGCATTACCGGCAAAGTTATGCCGATTGGGTTTAACATATATCGGAAAGAACGAGTTGCCGATAGTGTTCATGTTTGCAGCTGTACTGAAAAAATTAGATCTCCTCTATGCCATGCTGGATACACAGGATCATTGTATGTTAATCCAAAAGTGCCCAAATTTGGAAGTCCTTGAGACAAGGAACGTAATTGGAGATAGAGGATTAGAAGTTCTTGGTCACTGCTGTAAAAAGCTTAAAAGACTGAGGATCGAACGAGGTGCTGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTTTCCCACAGAGGACTAATTGCTTTGTCACAGGGCTGTCCAGAGCTTGAGTATTTGGCTGTTTACGTGTCTGATATTACAAATGCATCTCTGGAATATATTGGCACCCACTTGAAAAACCTCTGTGATTTTCGGCTTGTCTTGCTTGATCATGAACTGAAAATAACTGATTTGCCACTTGACAATGGAGTGCGGGCTTTACTGAGGGGGTGTGACAAGCTTAGAAGATTTGCACTGTATCTGCGGCGCGGGGGCTTGACTGATGTTGGACTTGGTTACATTGGACAGTACAGCCAAAATGTGAGGTGGATGCTGTTGGGGTATGTGGGGGAGTCAGATGCAGGGCTTTTGGAGTTCTCAAAGGGATGTCCTAGTCTTCAGAAACTTGAAATGAGAGGGTGTTCCTTTTTCAGTGAGCATGCACTGGCTGTAGCTGCAACACAACTGACTTCTCTTAGGTACTTGTGGGTGCAAGGGTATGGTGCATCTCCATCTGGACGTGATCTTTTGGCAATGGCTCGTCCCTTTTGGAATATTGAGTTAATTCCTTCTAGAAGGGTAGCCATTAATAGCAATATGGATGAGCCTTTGGTTATTGTTGAACATCCAGCTCATATTCTTGCATACTACTCTCTTGCTGGCCAAAGATCAGATTTTCCAGATACCGTTGTACCTTTGAACCCTGCTGCATATGTTGAAGCCTAG 1776 0.4578 MMGDRNVRRNRVVDVVLDCVIPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVREISQYFDCLKSLHFRRMIVNDSDLQLLARSRGHVLQALKLDKCSGFSTSGLYYIGRFCRNLRVLLLEESTIFEKDGDWLHELALNNTVLETLNFYLTDIADVKIQDLELLAKNCPNLVSVKITDCEISHLVNFFRNATALEEFCGGTYNEEPERYAAVALPAKLCRLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTQDHCMLIQKCPNLEVLETRNVIGDRGLEVLGHCCKKLKRLRIERGADDQGMEDEEGTVSHRGLIALSQGCPELEYLAVYVSDITNASLEYIGTHLKNLCDFRLVLLDHELKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGQYSQNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSEHALAVAATQLTSLRYLWVQGYGASPSGRDLLAMARPFWNIELIPSRRVAINSNMDEPLVIVEHPAHILAYYSLAGQRSDFPDTVVPLNPAAYVEA. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02153 591 Gene3D - 2 48 - -
Seca6g02153 591 SUPERFAMILY RNI-like 361 517 - -
Seca6g02153 591 CDD F-box_AtTIR1-like 20 48 - -
Seca6g02153 591 Pfam F-box 11 50 IPR041567 -
Seca6g02153 591 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 28 250 - -
Seca6g02153 591 FunFam Coronatine-insensitive protein 1 49 586 - -
Seca6g02153 591 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Seca6g02153 591 SUPERFAMILY RNI-like 87 399 - -
Seca6g02153 591 Gene3D Ribonuclease Inhibitor 49 587 IPR032675 -
Seca6g02153 591 SMART LRR_CC_2 428 454 IPR006553 -
Seca6g02153 591 SMART LRR_CC_2 133 158 IPR006553 -
Seca6g02153 591 SMART LRR_CC_2 480 504 IPR006553 -
Seca6g02153 591 SMART LRR_CC_2 370 394 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02153 Seca-Chr6 81815305 81819069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02153 K13463 - gmx:100779171 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02153 6 81815305 81819069 Seca6g02153 6 81815305 81819069 ECH
Seca8g00950 8 13081873 13086053 Seca6g02153 6 81815305 81819069 PCT