Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05117 ATGGCTTCTTTCAATCTCTCTTATTCTTCCTCACCAGCCCTCTCATGTCCACGGGCATGCAAACACTTCAAATTGTTCAATGATTTGCCTTTTGTCAGACTGAATTATAGAGTTCCCTCAAGTGACAGTGCTGCTTGTAGAGTTAAAGCCACATTGATCTCTGGAGGAGGTGACCTTCTTTCTTATTCAAATAGAAATGATGTTATGATGGGTAGAAATCTGGTTGGTGATGAGTCTGTTGGGATTGAGGTACAACCTAATGGAACCCTGGAAGCAGACACAGGGCTAACAAACAATGCTTTCTCTGTTGACAAAGATGAATTTGATCTGGACAGTCCCACAGCTGGTTTTGCTTCCATCCCTGAGGCCATTGAAGACATTCGCCAGGGAAAGATGGTACTGGTTGTAGACGATGAAGATAGAGAAAATGAAGGAGACTTGATAATGGCAGCACAGTTGGCAACACCAGAGGCTATGGCTTTTATTGTAAAGCATGGAACTGGCATAGTTTGTGTAAGCATGAAAGAGGAAGATCTGGATAGGTTGGAACTCCCTTTGATGGTAAACAGTAAGGATAATGATGAGAAGCTTTGTACAGCATTCACTGTAACAGTGGATGCTAAACATGGAACCACCACAGGGGTGTCAGCTCAGGATAGGGCGACAACAGTCTTAGCCCTTGCATCTAAAGATTCAACCCCAGGTGATTTCAACCGCCCAGGCCATATTTTCCCACTAAAATACAGGGAAGGTGGTGTTTTGAAGAGAGCTGGACATACAGAAGCTTCAGTTGATCTTGCCGTTCTTGCTGGTTTGGATCCAGTGGCAATTCTGTGTGAGGTTGTAGATGATGATGGTTCCATGGCTAGATTGCCAAAGCTTCGCCAGTTTGCAGAGCGTGAAAATTTGAAAATTGTATCTATTGCTGACTTGATAAGATATAGAAGAAAGAGAGATAAATTAGTGGATCTCACTTCTGCTGCAAGAATACCTACAATGTGGGGGCCATTCACAGCTCACTGTTATAAGTCACTTTTAGACGGGATGGAGCATATTGCAATGGTTAAGGGTGACATTGGAGATGGACAAGATGTTCTTGTGAGGGTACACTCTGAGTGTCTGACAGGAGACATATTTGGATCTGCCAGATGTGACTGTGGAAATCAGCTTGCACTAGCAATGCAACAGATTGAGGCTGCTGGTAGGGGTGTCCTGGTATATCTCCGTGGACATGAAGGAAGGGGTATTGGATTGGGCCACAAACTTCGTGCTTATAACTTGCAGGATGATGGACGGGACACTGTAGAAGCCAATGAGGAGTTGGGATTGCCTGTTGACTCTAGGGAGTATGGCATTGGGGCTCAGGTAATAATAGAAATACTTAATGGTTGGATATTTGACAATGGCATCTTATACTCACATCACATGACATTTGACCTGTTTTAA 1446 0.4378 MASFNLSYSSSPALSCPRACKHFKLFNDLPFVRLNYRVPSSDSAACRVKATLISGGGDLLSYSNRNDVMMGRNLVGDESVGIEVQPNGTLEADTGLTNNAFSVDKDEFDLDSPTAGFASIPEAIEDIRQGKMVLVVDDEDRENEGDLIMAAQLATPEAMAFIVKHGTGIVCVSMKEEDLDRLELPLMVNSKDNDEKLCTAFTVTVDAKHGTTTGVSAQDRATTVLALASKDSTPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLDPVAILCEVVDDDGSMARLPKLRQFAERENLKIVSIADLIRYRRKRDKLVDLTSAARIPTMWGPFTAHCYKSLLDGMEHIAMVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQVIIEILNGWIFDNGILYSHHMTFDLF. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05117 481 FunFam Riboflavin biosynthesis protein RibBA 322 462 - -
Seca6g05117 481 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 122 314 IPR000422 GO:0008686|GO:0009231
Seca6g05117 481 Pfam GTP cyclohydrolase II 327 457 IPR032677 -
Seca6g05117 481 SUPERFAMILY RibA-like 320 457 IPR036144 -
Seca6g05117 481 SUPERFAMILY YrdC/RibB 116 318 IPR017945 -
Seca6g05117 481 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 115 319 IPR000422 GO:0008686|GO:0009231
Seca6g05117 481 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 118 315 IPR000422 GO:0008686|GO:0009231
Seca6g05117 481 CDD GTP_cyclohydro2 321 457 IPR000926 GO:0003935|GO:0009231
Seca6g05117 481 PANTHER GTP CYCLOHYDROLASE II-RELATED 116 457 - -
Seca6g05117 481 Gene3D DHBP synthase 105 321 - -
Seca6g05117 481 Gene3D GTP cyclohydrolase II 322 461 IPR036144 -
Seca6g05117 481 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 108 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05117 Seca-Chr6 118364485 118369869 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05117 K14652 - gmx:100801046 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05169 12 139967250 139971091 Seca6g05117 6 118364485 118369869 PCT