Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g05044 ATGGCGGTGGAATATGAGTGCTGTGAAACAGAGTTTTTCATACGCATTCTGATAATAGTGGTGCTTGTGATATTCGCTGGATTGATGTCAGGGCTCACTTTAGGCCTCATGTCATTGAGCCTTGTTGATCTTGAGGTCCTTGCTAAGTCTGGTACCCCTCACGATCGAAAGCATGCTGCGAAGATATTGCCTGTTGTCAAAAATCAACATCTTTTGCTTTGTACCCTTCTAATTTGCAATGCTTTAGCCATGGAGGCACTTCCAATCTTTCTTGATAGTCTTGTTGTTGCGTGGGGTGCCATACTGATTTCAGTGACATTAATTCTTCTCTTTGGTGAGTTCTCTGACATTGGTTTACTTCTTAATTTGAAGATTATACCCCAATCAATTTGTTCTCGGTATGGTTTAGCAATTGGTGCAACAGTGGCTCCAGTTGTCCGTCTTCTTGTGTGGATATGTTCTCCTGTTGCTTATCCTATCAGCAAGCTGTTGGACCTTTTGCTGGGGCATCGACGTGAAGCCCTTTTCCGCAGAGCTGAGTTGAAAACACTTGTAAACTTGCATTGTAACGAGGCTGGAAAAGGTGGAGAATTGACACATGATGAAACAACAATCATTGCTGGGGCACTTGAAATGTCTGAGAAGACAGCCAGTGATGCCATGACCCCTATAACTGAATTATTTTCTGTTAATATTAATTCAAAACTTAATAGGGATCTGATGAATGTAATATTGGAGAAAGGGCATAGCAGAGTCCCTGTCTATTATGAGGAGCCTACAAATATTATTGGACTTATCCTGGTCAAGAATTTATTGACAATTGACCCAGAAGATGAAGCACCTGTGAAAAGTGTGACCATACGCAAAATACCAAGGGTTCCAGAAATGATGCCACTTTATGATATTTTGAATGAGTTCCAGAAGGGCCATAGCCACATGGCTGTTGTTGTCAGACATTGTGACAAGACAATTACAGGGCAACAATCTTCCAACAATATTGCCAATGACTCAGTGAGAGATGTGAAGGTGGATATTGATGGAGAGAAACCTCCCCAAGAGAAAATGTTGAAAGCCAAGAGGCAACTGCAGAGGAAAAGCTTTCCAAACGGAAGTAATTCGTATAAGAGTGGTTCTCGGAGCAAAAAATGGTCACAAAATATGTACTCAGATATTTTGGAAATAGATGGAAATTCACTTCCAAAGCTCCCAGAAAAAGAAGAAGCTGTTGGAATAATTACATTGGAAGATGTCATTGAAGAGCTTTTGCAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGACGACTCATGA 1314 0.4094 MAVEYECCETEFFIRILIIVVLVIFAGLMSGLTLGLMSLSLVDLEVLAKSGTPHDRKHAAKILPVVKNQHLLLCTLLICNALAMEALPIFLDSLVVAWGAILISVTLILLFGEFSDIGLLLNLKIIPQSICSRYGLAIGATVAPVVRLLVWICSPVAYPISKLLDLLLGHRREALFRRAELKTLVNLHCNEAGKGGELTHDETTIIAGALEMSEKTASDAMTPITELFSVNINSKLNRDLMNVILEKGHSRVPVYYEEPTNIIGLILVKNLLTIDPEDEAPVKSVTIRKIPRVPEMMPLYDILNEFQKGHSHMAVVVRHCDKTITGQQSSNNIANDSVRDVKVDIDGEKPPQEKMLKAKRQLQRKSFPNGSNSYKSGSRSKKWSQNMYSDILEIDGNSLPKLPEKEEAVGIITLEDVIEELLQEEIFDETDHHFDDS. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g05044 437 Gene3D - 200 335 IPR046342 -
Seca6g05044 437 Gene3D - 383 429 IPR046342 -
Seca6g05044 437 MobiDBLite consensus disorder prediction 364 381 - -
Seca6g05044 437 ProSiteProfiles CBS domain profile. 221 282 IPR000644 -
Seca6g05044 437 PANTHER METAL TRANSPORTER CNNM 3 435 IPR045095 GO:0010960
Seca6g05044 437 MobiDBLite consensus disorder prediction 345 381 - -
Seca6g05044 437 FunFam DUF21 domain-containing protein 200 336 - -
Seca6g05044 437 CDD CBS_pair_CorC_HlyC_assoc 216 317 IPR044751 -
Seca6g05044 437 SUPERFAMILY CBS-domain pair 205 423 IPR046342 -
Seca6g05044 437 MobiDBLite consensus disorder prediction 345 360 - -
Seca6g05044 437 ProSiteProfiles CNNM transmembrane domain profile. 8 202 IPR002550 -
Seca6g05044 437 Pfam Cyclin M transmembrane N-terminal domain 17 200 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g05044 Seca-Chr6 117701438 117705642 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g05044 K16302 - gmx:100795897 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g05044 6 117701438 117705642 Seca6g05044 6 117701438 117705642 ECH
Seca12g05061 12 137606911 137612577 Seca6g05044 6 117701438 117705642 PCT