Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05061 ATGGCGGTGGAATATTCATGCTGCGAATCGGAGTTCTTCATCCACATAGTCGTCATCGTCCTGCTGGTGCTCTTCGCCGGTTTGATGTCTGGCCTCACCTTGGGCCTCATGTCCTTGAGCCTCGTTGATCTTGAGGTTCTCGCTAAGTCTGGTACTCCTCAAGATCGAAAACATGCTGAGAAGATATTGCCCGTTGTCAAAAATCAGCATTTATTGCTTTGCACCCTGCTAATTTGCAATGCTGCAGCTATGGAGGCACTTCCTATTTTTCTTGATAGTCTTGTTACTGCATGGGGTGCTATCCTGATTTCAGTTACATTAATTCTTCTGTTTGGTGAGGTGAGAAAATTGTCCCTATATGTTTTAAATAAAATACAAGCATATCACAGTTCACAGATTAAAAGCCTGATCCTGCTGATCAATGGTTCTAACCCTTTGCAATTTGGAATGATGCATATTATACCCCAATCAGTTTGTTCTCGATATGGTTTAGCTATCGGTGCATCAGTGGCTCCCTTTGTCCGCGTGCTTGTGTGGATATGTTCTCCAGTTGCTTTTCCAATTAGCAAGTTGTTGGACTTTTTGCTTGGCCATCGACATGAAGCCCTTTTCCGCAGAGCTGAGTTAAAAACACTTGTAAATTTGCATGGTAATGAGGCTGGAAAAGGTGGGGAACTGACACATGATGAAACAACTATAATTGCTGGGGCACTTGAACTCAGTGAGAAGACAGCTAGTGATGCCATGACTCCTATATCTGAAACATTTGCCATTGATATTAATTCAAAGCTTGATAGGGAGCTGATGAATGATATATTGGAGAAAGGGCATAGCAGAGTCCCAGTCTATTATGAGCAGCCTACAAACATTATTGGACTTGTACTGGTCAAGAACTTATTGACAATTCATCCAGAAGATGAAGCTCCCGTGAAGAGTGTAACCATACGCAGGATTCCAAGGGTCCCAGAAAGTATGCCACTATATGACATTTTGAATGAGTTCCAGAAGGGTCATAGCCACATGGCCGTTGTTGTAAGAAGGAGTGACAAGAACAACCAGGAATCTTCCAAAAACTATGCAAATGATTCAGTGAGAGATGTGAAGTTGGATATTGATGGTGAAAAGCCTCCCCAAGAGAAAGTTTTGAAACCCAAGATGCCACTCCACAAGTGGAAAAGCTTTCCAAATACAAACAAATCGAATAGGGATGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATTGATGGAAGCCCCCTTCCAAAGATCCCTGAAGAAGAAGAAGCTGTTGGAATAATTACGATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTATGAAGACTCATGA 1395 0.4201 MAVEYSCCESEFFIHIVVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEVRKLSLYVLNKIQAYHSSQIKSLILLINGSNPLQFGMMHIIPQSVCSRYGLAIGASVAPFVRVLVWICSPVAFPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMNDILEKGHSRVPVYYEQPTNIIGLVLVKNLLTIHPEDEAPVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRSDKNNQESSKNYANDSVRDVKLDIDGEKPPQEKVLKPKMPLHKWKSFPNTNKSNRDGSRSRKWSKNMYSDILEIDGSPLPKIPEEEEAVGIITMEDVIEELLQEEIFDETDHHYEDS. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05061 464 PANTHER METAL TRANSPORTER CNNM 3 461 IPR045095 GO:0010960
Seca12g05061 464 FunFam DUF21 domain-containing protein 228 363 - -
Seca12g05061 464 Pfam Cyclin M transmembrane N-terminal domain 18 229 IPR002550 -
Seca12g05061 464 CDD CBS_pair_CorC_HlyC_assoc 244 345 IPR044751 -
Seca12g05061 464 ProSiteProfiles CNNM transmembrane domain profile. 8 230 IPR002550 -
Seca12g05061 464 Gene3D - 418 456 IPR046342 -
Seca12g05061 464 Gene3D - 230 362 IPR046342 -
Seca12g05061 464 SUPERFAMILY CBS-domain pair 233 450 IPR046342 -
Seca12g05061 464 MobiDBLite consensus disorder prediction 385 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05061 Seca-Chr12 137606911 137612577 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05061 K16302 - gmx:100801937 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05061 12 137606911 137612577 Seca12g05061 12 137606911 137612577 ECH
Seca12g05061 12 137606911 137612577 Seca6g05044 6 117701438 117705642 PCT