Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04952 ATGATAATTCTCCGGTTACAGTTGCAGGATTGGAGTGTCCAAGCAATTGTCAGCTGGATATTGTCCGAGTGTTTAGGGAGTGAAAATATCTCAATTGTAGCTGAAGAAGACGTTCAAAGTCTCTCCAAGGCTAATTCATCTGAACTATTACAAGCTGTGGTTGAAACTGTGAATGAATGTTTAGCTGAAGCACCTAGATTTGGAGTTCAGAAGCCAAAATCAGCTCTTGGGACTTCAGAAGTTCTTGAAAGCATTAGTCGCTGTAACTCAACTGGGGGTCCTAGTGGAAGATTTTGGGTACTGGATCCTGTTGATGGCACATTGGGGTTTGTTCGTGGAGATCAATATGCTGTAGCTCTAGCACTCATAGAGGATGGAGAAGTGGTGCTTGGTGTTCTTGGGTGTCCTAACTACCCAATGAGGAAGGAGTGGTTAAGTTATCATCACCGCTATCATAGGATTGTAGCAAAGTTGACTCCTCCAACTTCTGAAAGTTGGAACAAAGGTTGTGTGCTATATGCTAAAAGGGGTAGTGGCAAGGCTTGGATGCAACCTCTGCTCCATGTCAATAAGAAATTTGTGTGGCCAAACCATGCAAAACAAGTTTCTGTCTCTCCCATTGACAATCCAGCACTGGCCACTTTTTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTTGCTCACAGTGTTGGTCTCAGGAAACAACCATTAAGAGTGTACAGCATGGTGAAATATGCAGCTATAGCTCGAGGGGATGCAGAGGTTTTCATGAAGTTTGCAAGGGCTGGTTACAAGGAGAAAATATGGGATCATGCTGCAGGTGTTATCATCATACAGGAAGCTGGTGGGGTGGTAACAGATGCTGGAGGACTTCCCCTAGATTTCTCAAAAGGCTTATATTTAGAAGGCCTTGATCGTGGTATAATTGCTTGTTCTGGAGCCTCACTACATGGAAAGATCATTGATGCCGTTGATGCCAGCTGGGGCTCTTCTAGCCTCTGA 1020 0.4441 MIILRLQLQDWSVQAIVSWILSECLGSENISIVAEEDVQSLSKANSSELLQAVVETVNECLAEAPRFGVQKPKSALGTSEVLESISRCNSTGGPSGRFWVLDPVDGTLGFVRGDQYAVALALIEDGEVVLGVLGCPNYPMRKEWLSYHHRYHRIVAKLTPPTSESWNKGCVLYAKRGSGKAWMQPLLHVNKKFVWPNHAKQVSVSPIDNPALATFCEPVEKANSSHSFTAGLAHSVGLRKQPLRVYSMVKYAAIARGDAEVFMKFARAGYKEKIWDHAAGVIIIQEAGGVVTDAGGLPLDFSKGLYLEGLDRGIIACSGASLHGKIIDAVDASWGSSSL. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04952 339 ProSitePatterns Inositol monophosphatase family signature 2. 275 289 IPR020550 GO:0046854
Seca6g04952 339 FunFam PAP-specific phosphatase HAL2-like 203 336 - -
Seca6g04952 339 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 9 338 IPR006239 GO:0006790|GO:0008441
Seca6g04952 339 Gene3D - 203 333 - -
Seca6g04952 339 Pfam Inositol monophosphatase family 10 333 IPR000760 -
Seca6g04952 339 ProSitePatterns Inositol monophosphatase family signature 1. 99 112 IPR020583 -
Seca6g04952 339 Gene3D - 8 193 - -
Seca6g04952 339 PANTHER PHOSPHATASE 10 337 - -
Seca6g04952 339 CDD PAP_phosphatase 10 330 - -
Seca6g04952 339 PRINTS Inositol monophosphatase superfamily signature 272 296 IPR000760 -
Seca6g04952 339 PRINTS Inositol monophosphatase superfamily signature 99 115 IPR000760 -
Seca6g04952 339 SUPERFAMILY Carbohydrate phosphatase 10 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04952 Seca-Chr6 116965718 116969651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04952 K01082 - gmx:100776247 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04952 6 116965718 116969651 Seca6g04952 6 116965718 116969651 ECH
Seca12g04909 12 134211116 134212428 Seca6g04952 6 116965718 116969651 PCT