Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04936 ATGCAGCGTCTACCAGCAACGTTGTACCGCAAAATTGCTCGTCCAGCATGCGATGTTTTCATAAATCACCGTGGAATCGACACGAAGAGGAACGTGGCGGGGTTGTTGTACGATGGTCTTACGAGGATGGGAGTGAGGTCGTTTTTGGACAGCATGAACATGAAACCAGGGGATAGGCTCTTTGATCATATTGATAGAGCCATTGTGGGTTGCAAGGTTGGTGTTGCCGTCTTCTCTCCTCGTTATTGTGACTCATATTTCTGTCTCCATGAACTCGCTCTTCTCATGGAGTCCAAGAAGAGGGTCGTCCCTGTCTTCTTCGACGTGAAACCGTCGCAACTTGTGGTCAAAGACAACGGAACATGCCCTCCTAAACAGCTTCAAAGGTTCAATTTAGCACTTGAGGAAGCTAAAAACACTGTCGGATTGACCTTTGATTCTTTGAATGGGGATTGGTCAGAACTGCTGAGAGATGCTTCGGATGCAGTGATCATGAACTTGATGGAGGTAGAGGAAGAAGGGAAGAGGAGCATCAGGAAGCTACGATGA 549 0.4754 MQRLPATLYRKIARPACDVFINHRGIDTKRNVAGLLYDGLTRMGVRSFLDSMNMKPGDRLFDHIDRAIVGCKVGVAVFSPRYCDSYFCLHELALLMESKKRVVPVFFDVKPSQLVVKDNGTCPPKQLQRFNLALEEAKNTVGLTFDSLNGDWSELLRDASDAVIMNLMEVEEEGKRSIRKLR. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04936 182 PANTHER COP1-INTERACTING PROTEIN-RELATED 14 179 - -
Seca6g04936 182 Pfam TIR domain 19 132 IPR000157 GO:0007165
Seca6g04936 182 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
Seca6g04936 182 ProSiteProfiles TIR domain profile. 15 160 IPR000157 GO:0007165
Seca6g04936 182 Gene3D - 13 171 IPR035897 -
Seca6g04936 182 SMART till_3 16 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04936 Seca-Chr6 116719923 116720638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04936 12 146 Miscellaneous Gene Families AT1G57670 29.333 6.75e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04936 - - gmx:100798207 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04936 6 116719923 116720638 Seca6g04936 6 116719923 116720638 ECH
Seca12g04875 12 133147569 133149087 Seca6g04936 6 116719923 116720638 PCT