Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g04875 ATGCAGCGTTTGCCAGCTAGCTTGTGCCGTTCAGCATGTGACGTGTTCATCAACCACCGTGGGATTGACACTAAGAGGAACATAGCGGGTTTGCTATATGACCGTTTGACCAATGTTGGAGTGACGTCGTTTTTGGATAGCATGAATATGAAAGCTGGTGATAAATTGTTTCATCATATTGATAGGGCTATTCTTGGGTGTAAGGTTGGTGTTGCCGTGTTTTCTCCACGCTATTGTGAGTCCTATTTCTGTCTCCATGAACTCGCTCTTCTCATGGAGTCCAAGAAGAGAGTTGTGCCCATTTTCTATGACGTGAAGCCTTCGCAGCTTGTGGTCAAGGATAATGGTACTTGCCATGCTAAAGAGCTTCGAAGGTTTAGTTTAGCACTTGAGGAAGCTAAATACACTGTTGGATTAACCTTTGATCCTTTGAATGATGACTGGTCGGAGATGATAAGGGATGCTTCGGATGCAGTGATCATGAACTTGATGGAGGTAGAGGAAGAGCATAAACGCATGCAGACGAAACTGTGA 534 0.4457 MQRLPASLCRSACDVFINHRGIDTKRNIAGLLYDRLTNVGVTSFLDSMNMKAGDKLFHHIDRAILGCKVGVAVFSPRYCESYFCLHELALLMESKKRVVPIFYDVKPSQLVVKDNGTCHAKELRRFSLALEEAKYTVGLTFDPLNDDWSEMIRDASDAVIMNLMEVEEEHKRMQTKL. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g04875 177 Pfam TIR domain 15 107 IPR000157 GO:0007165
Seca12g04875 177 SMART till_3 12 145 IPR000157 GO:0007165
Seca12g04875 177 Coils Coil 163 177 - -
Seca12g04875 177 ProSiteProfiles TIR domain profile. 11 159 IPR000157 GO:0007165
Seca12g04875 177 PANTHER COP1-INTERACTING PROTEIN-RELATED 9 174 - -
Seca12g04875 177 Gene3D - 7 167 IPR035897 -
Seca12g04875 177 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 133 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g04875 Seca-Chr12 133147569 133149087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g04875 6 142 Miscellaneous Gene Families AT1G57670 30.921 2.87e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g04875 - - gmx:100798207 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04875 12 133147569 133149087 Seca6g04936 6 116719923 116720638 PCT