Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04415 ATGAAGACAGAATCGGGATCGAAAGAGGAAACGAAAACCTATCAGGAATGGTTCAACTTGGCAGACTCAGATGGAGATGGTCGCATCACTGGGAACGACGCTACCAAGTTCTTTGCTCTCTCCAATTTGTCTCGCTCTCAACTCAAGCAACTTTGGGCTCTCGCCGATACAAAACGGCAAGGGTTTTTAGGTTTCTCAGAGTTCGTTACTGCAATGCAGCTTGTATCGCTGGCACAAGCAGGATATGAACTTAACTCAGATATCCTAAAAAATCAAATTGACAAGGAAAATGTCAAACCTCCAGTTATGGAAGGAGTTGATGCTTTAGTGGCAAAAACAAAGTGTTTAACAATTAATTCCCCACCCGAAGTAAATGAATATGTAGTGACTGCTCAGCCTCAACCATTTCCAGCCAAGCCATGGTTTACTTCAAAATCTTCAAAGAAATTACCTCTCAATGCAGTTACATCAATAATTGATGGCTTGAAGAGATTGTATAATGAGAGGCTAAAGCCTTTGGAAGTCACTTATCGATATAATGATTTTGTATCTCCATTGTTGACCAGCAGTGATTTTGATGCTAAACCCATGGTGATGCTTCTTGGTCAATATTCCACAGGAAAAACAACATTTATTAAACATTTGTTAAAATGCGATTATCCAGGAGCACACGTTGGACCAGAACCTACAACTGATAGATTTGTTGTCGTCATGTCTGGTCCTGATGAGCGGAGTATTCCTGGAAATACTATAGCTGTTGATGCTGACATGCCATTTGGTGGCCTGACAACATTTGGAGGTTCATTTTTGTCAAAGTTCCAATGTTCTCAAATGCCGCATCCACTGCTAGATGAGGTAACATTTGTGGACACTCCTGGTGTCCTATCTGGAGAGAAACAAAGGACTCAACGAAGCTATGATTTCACTGGTGTTGTATCTTGGTTTGCTGCCAAATGTGATCTTATTCTTCTGCTATTTGATCCGCATAAACTTGACATCAGTGATGAGTTTAAACGTGTAATCGCATCTTTACGTGGTAATGATGACAAGATACGCGTAGTTTTGAATAAGGCCGACCAAGTTGATACTCAACAACTTATGAGAGTCTATGGAGCACTGATGTGGTCCCTGGGGAAAGTTCTAAATACTCCAGAAGTTTCACGTGTATACATTGGCTCATTTAATGATAAGCCTTTAGACGAAGCCTTTGTTGGTCAATTAGGACAGGATCTCTTTGAGAAGGAACAGAATGATCTGCTTGCAGATCTGTTAGACATTCCAAAGAAGGCCTGCGATCGTCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCATATATAATTAGCCATCTTAAGAAGGAAATGCCTGCAATAATGGGCAAAGCCAAGGCTCAACAAAGGCTTATAGATAATCTTGATGATGAATTTGCAAAGGTTCAAAGGGAGTTTCATCTACCAGCTGGTGATTTTCCCAATGTAGAGCACTTCAGAGAAGTTTTAAGTGGTTATAGCATCGACAAATTTGAGAAGCTAAAGCCTAAAATGATTCAAGTCGTAGATGACATGCTTGGGTATGAAATACCAGAGCTTTTAAAGAAATTCAGAAACCCTTATGATTAA 1632 0.4007 MKTESGSKEETKTYQEWFNLADSDGDGRITGNDATKFFALSNLSRSQLKQLWALADTKRQGFLGFSEFVTAMQLVSLAQAGYELNSDILKNQIDKENVKPPVMEGVDALVAKTKCLTINSPPEVNEYVVTAQPQPFPAKPWFTSKSSKKLPLNAVTSIIDGLKRLYNERLKPLEVTYRYNDFVSPLLTSSDFDAKPMVMLLGQYSTGKTTFIKHLLKCDYPGAHVGPEPTTDRFVVVMSGPDERSIPGNTIAVDADMPFGGLTTFGGSFLSKFQCSQMPHPLLDEVTFVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVSRVYIGSFNDKPLDEAFVGQLGQDLFEKEQNDLLADLLDIPKKACDRRINEFVKRARSAKIHAYIISHLKKEMPAIMGKAKAQQRLIDNLDDEFAKVQREFHLPAGDFPNVEHFREVLSGYSIDKFEKLKPKMIQVVDDMLGYEIPELLKKFRNPYD. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04415 543 CDD EH 14 80 IPR000261 GO:0005515
Seca6g04415 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 428 IPR030381 GO:0005525
Seca6g04415 543 Gene3D - 162 534 - -
Seca6g04415 543 SMART efh_1 13 41 IPR002048 GO:0005509
Seca6g04415 543 SMART efh_1 47 75 IPR002048 GO:0005509
Seca6g04415 543 Pfam 50S ribosome-binding GTPase 198 357 IPR006073 GO:0005525
Seca6g04415 543 Pfam Domain of unknown function (DUF5600) 433 534 IPR040990 -
Seca6g04415 543 FunFam EH domain-containing protein 1 198 426 - -
Seca6g04415 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Seca6g04415 543 Gene3D - 5 103 - -
Seca6g04415 543 Coils Coil 466 486 - -
Seca6g04415 543 ProSiteProfiles EH domain profile. 10 104 IPR000261 GO:0005515
Seca6g04415 543 Pfam Cytoskeletal-regulatory complex EF hand 9 75 IPR000261 GO:0005515
Seca6g04415 543 CDD EHD 197 441 - -
Seca6g04415 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 465 IPR027417 -
Seca6g04415 543 SUPERFAMILY EF-hand 7 92 IPR011992 -
Seca6g04415 543 ProSiteProfiles EF-hand calcium-binding domain profile. 46 78 IPR002048 GO:0005509
Seca6g04415 543 SMART eh_3 3 98 IPR000261 GO:0005515
Seca6g04415 543 PANTHER EH DOMAIN 9 540 - -
Seca6g04415 543 Gene3D - 198 426 IPR027417 -
Seca6g04415 543 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04415 Seca-Chr6 111700718 111706374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04415 8 543 EF-hand Containing Proteins AT4G05520 78.358 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04415 K12483 - gmx:100805498 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04415 6 111700718 111706374 Seca6g04415 6 111700718 111706374 ECH
Seca12g00142 12 1324692 1330005 Seca6g04415 6 111700718 111706374 PCT