Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00142 ATGAAAACAGTATCGGATTGGATCGATTCGTGTTCGACAGAACAAATGGAGACGTATCAGCAATGGTTCAACTTCGCCGATTCAGATGGAGATGGCCGCGTCACTGGAAACGATGCTACCAAGTTCTTTGCCCTCTCCAATTTATCTCGCTCCCAACTCAAGCAGGTTTGGGCCATTGCCGATACCAAAAGACAAGGATTTTTAGGTTTCCAAGAGTTTGTTACGGCAATGCAGCTCATTGCTTTGGCACAAGCTGGATATGATATCAACTCAGACATCCTTAAAACTGAAATTGATAATGAAAATATAAAATCTCCAGTAATGGAAGGACTCGATGCTTTAGCAGCAAAAACAGAGAGTTCAACAATAAATGCCCAAATTGATGCATTTGGGACCGCTCAGCCTCAGCCTTTGCCACCGAATCAATGGGGTGCATCAAAATCCGTAAAGAAATTGCCTCTTAATGCAGTGACATCAATAATTGATGGCTTGAAGAAATTATATGTGGAGAGGCTAAAGCCATTGGAGGTCACATATCGTTTCAATGATTTTGTATCTCCATTATTGACCAACAGTGATTTTGATGCTAAACCAATGGTCATGCTTCTTGGTCAATATTCCACTGGGAAAACAACATTTATAAAACATTTACTAAGATGTGAATATCCAGGGGCACACATTGGACCAGAGCCTACAACTGACAGATTTGTTGTTGTCATGTCTGGATCTGATGAGAGGAGTATTCCTGGAAATACTGTAGCTGTTGATGCTAGCATGCCTTTTAGTGGCCTGTCAACTTTTGGTGGTTCTTTTTTGTCAAAATTCCAATGTTCTCAAATGCCACATCCACTGCTAGATGAAATAACATTTGTGGACACTCCTGGTGTCCTCTCTGGAGAAAAGCAAAGGACTCAACGAAGTTATGATTTCACTGGTGTTATATCTTGGTTTGCTGCAAAATGTGATCTGATTCTTCTCCTATTTGATCCTCATAAACTTGACATCAGTGATGAATTTAAACGTGTAATTGCATCTCTACGTGGTCATGATGACAAGATACGTGTGGTTTTGAATAAGGCAGACCAAATTGATACTCAACAACTTATGAGAGTTTATGGAGCATTGATGTGGTCTCTTGGGAAAGTTTTGAATACACCAGAAGTTGTGCGTGTATATATTGGCTCATTTAATGATAAGCCTATAAATAAAGGCTTTGTTGGCCCATTAGGACAGGATCTCTTTGAGAAGGAACAGAATGATCTGCTTGCAGATTTGGTAGATATTCCAAGAAAGGCATGCGACAGTCGGATCAATGAATTTGTGAAACGTGCTAGATCTGCTAAAATTCATGCATATATAATTAGTCATCTTAAGATGGAGATGCCTGCATTGATGGGCAAAGCTAAGGCTCAACAAAGGCTTATCGATGATCTTGAAGATGAATTTAGAAAGGTTCAAAGGGAGTTTCATCTACCAGCTGGTGATTTTCCCAATGTAGAACACTTCAGAGAGATTTTGAGTGGTTATAGTATCGACAAATTTGAGAAACTAAAGCCCAAAATGATTCAAGCCGTAGACGACATGCTTGGATATGAAATACCGGAGCTATTAAAGAAATTCAGAAATCCTTATGATTAA 1638 0.3944 MKTVSDWIDSCSTEQMETYQQWFNFADSDGDGRVTGNDATKFFALSNLSRSQLKQVWAIADTKRQGFLGFQEFVTAMQLIALAQAGYDINSDILKTEIDNENIKSPVMEGLDALAAKTESSTINAQIDAFGTAQPQPLPPNQWGASKSVKKLPLNAVTSIIDGLKKLYVERLKPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLRCEYPGAHIGPEPTTDRFVVVMSGSDERSIPGNTVAVDASMPFSGLSTFGGSFLSKFQCSQMPHPLLDEITFVDTPGVLSGEKQRTQRSYDFTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQIDTQQLMRVYGALMWSLGKVLNTPEVVRVYIGSFNDKPINKGFVGPLGQDLFEKEQNDLLADLVDIPRKACDSRINEFVKRARSAKIHAYIISHLKMEMPALMGKAKAQQRLIDDLEDEFRKVQREFHLPAGDFPNVEHFREILSGYSIDKFEKLKPKMIQAVDDMLGYEIPELLKKFRNPYD. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00142 545 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 194 429 IPR030381 GO:0005525
Seca12g00142 545 Pfam N-terminal EH-domain containing protein 163 195 IPR031692 -
Seca12g00142 545 ProSiteProfiles EH domain profile. 15 86 IPR000261 GO:0005515
Seca12g00142 545 Gene3D - 200 428 IPR027417 -
Seca12g00142 545 SMART eh_3 8 103 IPR000261 GO:0005515
Seca12g00142 545 SUPERFAMILY EF-hand 6 89 IPR011992 -
Seca12g00142 545 FunFam EH domain-containing protein 1 200 428 - -
Seca12g00142 545 Pfam Cytoskeletal-regulatory complex EF hand 14 80 IPR000261 GO:0005515
Seca12g00142 545 Pfam Domain of unknown function (DUF5600) 436 536 IPR040990 -
Seca12g00142 545 CDD EH 19 85 IPR000261 GO:0005515
Seca12g00142 545 Coils Coil 461 488 - -
Seca12g00142 545 Pfam Dynamin family 200 359 IPR045063 -
Seca12g00142 545 Gene3D - 10 105 - -
Seca12g00142 545 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Seca12g00142 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 466 IPR027417 -
Seca12g00142 545 PANTHER EH DOMAIN 13 542 - -
Seca12g00142 545 SMART efh_1 18 46 IPR002048 GO:0005509
Seca12g00142 545 SMART efh_1 52 80 IPR002048 GO:0005509
Seca12g00142 545 Gene3D - 164 536 - -
Seca12g00142 545 CDD EHD 199 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00142 Seca-Chr12 1324692 1330005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00142 8 545 EF-hand Containing Proteins AT4G05520 76.208 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00142 K12483 - gmx:100803757 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00142 12 1324692 1330005 Seca6g04415 6 111700718 111706374 PCT