Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04338 ATGAAAGCATCAATTGAACAATTGAAGCTTGCCTCTGCACAAGCCCAAGAGGAGCAGGCAAAGGTCATGGCAGAAAGAGAATCCCAACTAAGTTTTTACAAAACAGCTAAGGAAGAAGCACAGGTGAAATTGGCAGAATTGAAGAATGAGTATGATCCTGAACTAACACAAAATCTAGAGGCCAAACTTGCTGAAACAAATGAAGAGATTCAGGTTATTCAAGAGCAGATGAAAGAGGCTCATGCTTCTGAGATGGATTCTGTGAGACTAATAACTCTAGAGATTAAAGAAGCCACAAAGGCACTTCAGGAAGCTTCTGAAGAAGAAAGCTCCCTGAGAAACCTAGTGGCTTCTCTTAGGACAGAATTAGAACAAGTGAAGGAAGAGAAAGAAGAGCTCAAGAAGAAGGAACAAGCAGCAGAAGCTCTTGCTGCTAACCTAACTAGTGAACTACAAAGTAGCATGGAAGAGGCAGGTTCTATGGAGGAAAAAGAATCTCATAACATTGATGAAATGAACATGAAAATCCAGCATCTGTCATTTGAGACAGAAAATGCAAAAAGAGAAGAAGAAGAAATGAAAACAAAAGCTCAACAGCTGAAGCAAGAGGCTGAAAAATTCAAAGCTGTGGCTGAAGAATTAGAGCAGAAGCTAGAGCTTTTCCTGAAACAATCTGAAGAAGCCAAAGAAGCAGAAGAAAAAGCCATTGAGGAGATGAAGATTTTGTCTGAATCTCAAGGTAGAGTCTCAGTTTCAGATTCCAATGGTAAGATAGTGTTGACAGTTGATGAGTTTGCATCTCTGAGTGGAAAAATCAAGGAATCTGAAGACTTGATTGAGAGGACTGAAGCAGCTGCAATAGTTCAAGTGGAAGCAATCAACACAAGGAAAAATGAAGTGGACAAAAAAGTGGAAGCTAATCTTAAAGCAATTGAAGAAATAAAGGCTGCAACTGACATGGCTTTGAGGAATGCAGAGATGGCAGATTCTGCAAAAGTGGCAGTTGAGGGTGAACTCAAAAGGTGGCGTCATGAAGAACAAAAAGGGGTATCTGATTTGGATTACTCAGATAATTCTTCAAGACCAATCTCCCTGCGCAGCTAG 1104 0.4031 MKASIEQLKLASAQAQEEQAKVMAERESQLSFYKTAKEEAQVKLAELKNEYDPELTQNLEAKLAETNEEIQVIQEQMKEAHASEMDSVRLITLEIKEATKALQEASEEESSLRNLVASLRTELEQVKEEKEELKKKEQAAEALAANLTSELQSSMEEAGSMEEKESHNIDEMNMKIQHLSFETENAKREEEEMKTKAQQLKQEAEKFKAVAEELEQKLELFLKQSEEAKEAEEKAIEEMKILSESQGRVSVSDSNGKIVLTVDEFASLSGKIKESEDLIERTEAAAIVQVEAINTRKNEVDKKVEANLKAIEEIKAATDMALRNAEMADSAKVAVEGELKRWRHEEQKGVSDLDYSDNSSRPISLRS. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04338 367 Coils Coil 88 164 - -
Seca6g04338 367 Coils Coil 1 25 - -
Seca6g04338 367 Coils Coil 56 83 - -
Seca6g04338 367 MobiDBLite consensus disorder prediction 353 367 - -
Seca6g04338 367 Coils Coil 169 245 - -
Seca6g04338 367 MobiDBLite consensus disorder prediction 344 367 - -
Seca6g04338 367 Pfam Weak chloroplast movement under blue light 14 348 IPR008545 -
Seca6g04338 367 Coils Coil 30 50 - -
Seca6g04338 367 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04338 Seca-Chr6 111061325 111064436 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04338 - - lja:Lj6g3v1709500.1 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04338 6 111061325 111064436 Seca6g04338 6 111061325 111064436 ECH
Seca12g00085 12 871675 874038 Seca6g04338 6 111061325 111064436 PCT