Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04335 ATGGGGGTCGTTTCCCAGGATGCCCTCAATCAACTCCAAGCTCTCATGGATCAAGTTGAGGAGCCATTGCAGAGAACGTTTCAGAATGTCCATCAAGGATACATCACTGAAACCTTAATGCGCTTTCTAAAAGCAAGGGAGTGGAATACTTCCAAGGCCCATAAAATGTTGGTTGATAGTTTAAACTGGAGAGTACAAAATGAGATTGACAACATATTATCTAAACCAATAATCCCTCAAGATTTATACAGAGCAGTGCGCGATTCACAACTCATAGGATTGTCAGGGTACTCCACAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGACTTAGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCACATTCAAATTAATGAATATCGTGATCGTGTAATCTTGCCTTCTGCATCAAAGAAGCATGGTCGTCCTATTACAACATGCATAAAGGTTTTGGACATGAGTGGTCTCAAGCTGTCAGCCCTGAATCAGATTAAGTTGTTAACAATAATATCATCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAAAAAAGTGCAAGTCCTACCAGGTTGTGGGCGAGATGAGCTGTTGAAGGTAGGCTTTCTTTTTTTCCCCAATTCTATCATGGATTACGCATCTCTGCCTCACTTCTGTAGAAAAGAAGGCTCTGGATCATCCAGAAATTCAGATAATGGAAGTGAAAATTGCTATTCCTTGGATCACTCCTTTCATCAACAGCTCTACAATTACATCAAGGAGCAATCCAGAATCCATGGAGCTGGTGAACCCATCAAGCAGGGATCTTTCCATGTAGATTTTCCTGAACCTCCTGCTGAGGAAGTAGAGATTGCCAAGACTATAGAGTCAGAGCTACACAAGTTTGAGAACAGCCATGGGAATGGTGATTGA 1008 0.4127 MGVVSQDALNQLQALMDQVEEPLQRTFQNVHQGYITETLMRFLKAREWNTSKAHKMLVDSLNWRVQNEIDNILSKPIIPQDLYRAVRDSQLIGLSGYSTEGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGRPITTCIKVLDMSGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLPGCGRDELLKVGFLFFPNSIMDYASLPHFCRKEGSGSSRNSDNGSENCYSLDHSFHQQLYNYIKEQSRIHGAGEPIKQGSFHVDFPEPPAEEVEIAKTIESELHKFENSHGNGD. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04335 335 SUPERFAMILY CRAL/TRIO N-terminal domain 13 76 IPR036273 -
Seca6g04335 335 CDD SEC14 83 250 IPR001251 -
Seca6g04335 335 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 332 - -
Seca6g04335 335 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Seca6g04335 335 Pfam CRAL/TRIO domain 90 221 IPR001251 -
Seca6g04335 335 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Seca6g04335 335 Gene3D - 2 289 IPR036865 -
Seca6g04335 335 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 232 IPR001251 -
Seca6g04335 335 SMART sec14_4 79 256 IPR001251 -
Seca6g04335 335 SUPERFAMILY CRAL/TRIO domain 81 232 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04335 Seca-Chr6 111049270 111055912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04335 1 332 Acyl Lipid Metabolism Gene Families AT5G47730 74.096 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04335 K26544 - gmx:100793867 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04335 6 111049270 111055912 Seca6g04335 6 111049270 111055912 ECH
Seca12g00084 12 865900 871073 Seca6g04335 6 111049270 111055912 PCT