Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00084 ATGACTGGTTTGAAGCTGTCAGCTCTGAATCAGATTAAGTTGTTAACTATTATATCATCCATTGATGATCTGAACTACCCAGAGAGGACAAATACTTATTTCATTGTAAATGTCCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAGTGCAGGTCCTACCGGGTTGTGGACGAGATCAGCTGTTGAATATCATGGATTACCAATCTCTGCCACATTTCTGTAGAAAAGAAGGCTCTGGATCATCCAAACATTCAGAAAATGGAAGTGAAAATTGCTATTCCTTGGATCATCCTTTCCATCAAGAGCTCTACAACTACATCAAACAGCAAGCCAGACTCCATGAAGCTGTTGAACCCATCAAGCAGGGATCATTTCATGTAGATTTTCCTGAACCTCCAGATGAGGATGCAGAGATTGCCAAGACTATAGAGTCAGAGTTACAGGAATTTGAGAACGGCAGTGATCACTAA 504 0.4048 MTGLKLSALNQIKLLTIISSIDDLNYPERTNTYFIVNVPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDQLLNIMDYQSLPHFCRKEGSGSSKHSENGSENCYSLDHPFHQELYNYIKQQARLHEAVEPIKQGSFHVDFPEPPDEDAEIAKTIESELQEFENGSDH. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00084 167 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 164 - -
Seca12g00084 167 Gene3D - 1 128 IPR036865 -
Seca12g00084 167 Pfam CRAL/TRIO domain 1 84 IPR001251 -
Seca12g00084 167 CDD SEC14 1 84 IPR001251 -
Seca12g00084 167 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 1 82 IPR001251 -
Seca12g00084 167 SUPERFAMILY CRAL/TRIO domain 1 121 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00084 Seca-Chr12 865900 871073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00084 1 163 Acyl Lipid Metabolism Gene Families AT1G55840 65.244 1.18e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00084 K26544 - gmx:547507 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00084 12 865900 871073 Seca6g04335 6 111049270 111055912 PCT