Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00467 ATGGCTCTGCAATTCAGCGGGTTGAGGTGCTCTCCATTGTCATCCTCTTCACGTTTCTCCAAACCCTTCTTCCCCTGTTGGAGCCAAACGCAGAAGCGCGTTTCAATTCCCATAGTGAACTCAGTGGCACTCGCCAATGCACAGAACAAAGAGAGGTTGAAGCTTAAGGAACTCTTCGATGAAGCCTACGAGAGATGCCGCACTGCTCCCATGGAAGGCGTTTCCTTCACCCTCGAACAGTTCACTGCCGCTCTCGAAAATTATGACTTCGATTCTGGAGTTGGCACCAAGGTTAAAGGCACTGTGTTCTGCACAGATGCTAATGGTGCACTTGTTGATATCACTGCAAAGTCTTCCGCATACTTGCCCCTTCAAGAGGCGTGCATCCATAGGGTTAAGAATGTAGAAGAAGCTGGGATAGTTCCTGGGATGAGAGGGGAGTTTTTAGTCATTGGTGAAAATGAAGCAGATGATAGCTTGATTTTGAGTTTAAGGTCTATCCAGTATGACCTTGCTTGGGAACGTTGTAGACAACTTCAAGCAGAAGATGTTGTTGTCAAGGGTAAGGTTGTTGGTGCAAATAAAGGTGGAGTGGTAGCTGAGGTGGAAGGCCTAAGAGGGTTTGTTCCATTCTCACAGATATCAATGAAAGTAACTGGAGAAGAGCTTCTAGAGAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTCCTCAGTAACCGCAAGGCCATGGCTGACAGCCAGGCACAGTTAGGAATTGGATCAGTAGTTACTGGCTCTGTTCAAAGCCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAAATCAGTCATGACCGTGTAACTGATATTGCAACTGTTCTTCAACCTGGTGATATGCTAAAGGTGATGATCCTAAGCCATGATCGGGAGAGAGGCCGAGTAAGTCTTTCCACAAAGAAGTTAGAACCTACACCTGGAGACATGATCCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCTCAAGCAGAAGCCATGGCCCGTGCCGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTTAGCAGTGATGGGATCTTGGGAACACTTACTGAAGACTTGCCTGTTGAGGGACTGGATCTGAGTGAGGTGCCATCAGCTGAAGAATCATGA 1233 0.472 MALQFSGLRCSPLSSSSRFSKPFFPCWSQTQKRVSIPIVNSVALANAQNKERLKLKELFDEAYERCRTAPMEGVSFTLEQFTAALENYDFDSGVGTKVKGTVFCTDANGALVDITAKSSAYLPLQEACIHRVKNVEEAGIVPGMRGEFLVIGENEADDSLILSLRSIQYDLAWERCRQLQAEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISMKVTGEELLEKELPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDIATVLQPGDMLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGTLTEDLPVEGLDLSEVPSAEES. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00467 410 Gene3D - 254 332 IPR012340 -
Seca12g00467 410 FunFam 30S ribosomal protein S1, chloroplastic 177 253 - -
Seca12g00467 410 ProSiteProfiles S1 domain profile. 183 247 IPR003029 GO:0003676
Seca12g00467 410 FunFam 30S ribosomal protein S1 79 176 - -
Seca12g00467 410 SUPERFAMILY Nucleic acid-binding proteins 184 254 IPR012340 -
Seca12g00467 410 Gene3D - 176 253 IPR012340 -
Seca12g00467 410 PANTHER 30S RIBOSOMAL PROTEIN S1 47 397 - -
Seca12g00467 410 SUPERFAMILY Nucleic acid-binding proteins 88 191 IPR012340 -
Seca12g00467 410 Coils Coil 345 365 - -
Seca12g00467 410 Gene3D - 78 175 IPR012340 -
Seca12g00467 410 CDD S1_RPS1_repeat_hs4 260 328 - -
Seca12g00467 410 FunFam 30S ribosomal protein S1 256 335 - -
Seca12g00467 410 ProSiteProfiles S1 domain profile. 95 165 IPR003029 GO:0003676
Seca12g00467 410 CDD S1_RPS1_repeat_ec1_hs1 95 165 - -
Seca12g00467 410 ProSiteProfiles S1 domain profile. 260 328 IPR003029 GO:0003676
Seca12g00467 410 PRINTS Ribosomal protein S1 signature 231 251 IPR035104 -
Seca12g00467 410 PRINTS Ribosomal protein S1 signature 113 127 IPR035104 -
Seca12g00467 410 PRINTS Ribosomal protein S1 signature 186 202 IPR035104 -
Seca12g00467 410 PRINTS Ribosomal protein S1 signature 95 113 IPR035104 -
Seca12g00467 410 Pfam S1 RNA binding domain 259 328 IPR003029 GO:0003676
Seca12g00467 410 Pfam S1 RNA binding domain 181 245 IPR003029 GO:0003676
Seca12g00467 410 SMART S1_6 93 165 IPR022967 -
Seca12g00467 410 SMART S1_6 258 328 IPR022967 -
Seca12g00467 410 SMART S1_6 181 247 IPR022967 -
Seca12g00467 410 SUPERFAMILY Nucleic acid-binding proteins 259 338 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00467 Seca-Chr12 4097755 4101070 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00467 K02945 - ming:122068764 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00467 12 4097755 4101070 Seca12g00467 12 4097755 4101070 ECH
Seca12g00467 12 4097755 4101070 Seca6g04139 6 109130651 109134711 PCT