Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04136 ATGTTCTTCAGTGGCGATCCCTCAACTCGCAAGCGCGTTGATTTAGGTGGTCGCAGCTCGAAGGAAAGGGATAGAAAGAATCTTCTAGAACAGACGCGATTGGAGCGGAATCGACGGTTATGGCAGCGTCAGCAGAACTCTGCTGCAATCAAGATTCAGAGATGCTTCAGAGGGAGAAAAGTTGTTAGAACTGAACAGTCTAAGCTGCGAGAGAAATTCCTTAGAGTCTATGGGAAGAACTGCCAGAATTTAGACTGGAATGCTTTTGGTCCGGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGCGGAAAATATTGATGATTTTTTAGTTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTATCAAAGAGAGTGGGTATGTCGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACATGTGCTTTGGTGAACTACCGAGTGAAGCAACTTGTATATACTTGTATTCGTGCCCTACATCAGAATAGGAATCAGTTGAAGGATCAACTTTTATTGACTCCAAAGGAATCTAATGCATCAGCTATTCCTTTATTGGAAGTTTTAGTATTGTTGATGGATCCCAAACTGCCGTGGAGCTGTAAGATAGTAGAAAATCTCTCTCAAAACATTGCATTCAGCCTACTTAGAGAGATTATTCTTACAGGAAAGGAGAATTTGGAAAGTTGTATTTATGGTGAACATGGATCATCTTTGGAGCGTGTGCTTGCTGTTGTAATATGTCACACTGGTCAGAAACCATGTATCTGTACACATATTGATCCAAGATATAGCTTCTCATCACAGATTCTCACAATTCCTTTCTTGTGGCAAGTTTTTCCAAACTTAAGACAGATTTTTGCAGAACAGGGCCTGAGCCAACATTATATTCATCAAATGGCAACATTTGTGCCAAATCTAATCAGTTTTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGGATTGCTTTGTCTCGACCTGACTGTTCATTTGATATGGCCATAGACCTTTCAGCTGTTACTACGTATTTACTGGAGGCACACCCATCTCGGACTAAATCTGATAATAGAGAAAATTCTATGATTCCTGACGATGATATGACTGGCGATGATGAAGTCATGGAAGTAGCATTGGATAGGAAATTGGATCAACAAATTTGTAATGCCATAGATACTCACTTCCTTCTGCAACTGACAAATATATTATTTAGAGATATTTCATCTGCCAATGGTTCAGATTATGGGCCAGATGATAGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAACACATTGCCACTTGAAAGGATTATGACTGTGCTTGCCTATAGAACTGAACTTGTTCCTATGCTTTGGAATTTTATGAAGCGATGCCATGAGAATAAAAAATGGTCATCTTTGTCTGAACGGTTATCATACCTCTCAGGTGATGCCCCTGGCTGGCTGCTACCCCTGGCTGTATTCTGTCCTGTCTACAAGCATGTGCTTATGATAGTTGATAATGAGGAATATTATGAGCGGGAGAAACCACTATCACTGAAGGATATTAGGAGCCTCATCATTCTGTTGAGGCAGGTTCTGTGGCAACTACTGTGGGTGAATCATACCTCGTCAGCTAATTCGGCAAAATCTGTTCCAGTTAGCACAACTAGTAAAAGGCTGTCTGTTGAAGCCATTCAACAGAGGGTTAGCATAGTAGTCTCTGAGCTCCTGTCCCAGCTGCAAGATTGGAACAACAGACGACAGTTTATGTCCCCCAGTGACTTCCATGCTGATGGGGTGAATGATTTCTTTATCTCTCAGGCTGTTGTAGAAAATACGCGAGCAAATGAAATTCTAAAGCAAGCCGCATTCTTGATACCATTTACAAGCAGGGTTAAAATATTCACTTCTCAACTAGCTGCTGCTAGGCAAAGGCATGGTTCTCAGGCTGTATTTACTAGAAACCGGTTCAGAATAAGACGAGATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGATCTTCGAGGACTGATTCGCGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCCAATCCTGGATCGGGAATGATACACGAACAACATCTCCAATTTTTCCACTTTCTTGGTACTCTCCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAGAAGCACAATTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCGTTATGTGGGCGACATTTCGGAGTTGGAACTATATTTTGTTGTAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACATGCGAGTCACTAATGAGAATGTTATTACTTTTATCCATCTTGTGGCCAATCATCGCTTGAATTTTCAGATACGGCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGACTGCACACAAACTATGCAGGAGGCTATCATAGTGAGCATTATGTGATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAAGAAGAAATTTTTAAAGTTTGTGACAGGTTGCTCACGGGGACCGCTGCTTGGATTCCGATATCTTGAACCTTTGTTCTGCATACAAAGGGCTGGTGGTAATGCTTCTGATGAAGCTCTTGACCGATTACCGACATCAGCTACTTGTATGAATCTACTAAAGCTTCCACCTTATAGAAGCAAGGATCAACTGGAAACCAAATTACTGTATGCCATAAATGCTGATGCTGGGTTTGATTTGAGTTAA 3099 0.4056 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWQRQQNSAAIKIQRCFRGRKVVRTEQSKLREKFLRVYGKNCQNLDWNAFGPDSDFLRQFLYFFNAENIDDFLVLVQICRLLQQFIKESGYVVRLFAGVDYSSTCALVNYRVKQLVYTCIRALHQNRNQLKDQLLLTPKESNASAIPLLEVLVLLMDPKLPWSCKIVENLSQNIAFSLLREIILTGKENLESCIYGEHGSSLERVLAVVICHTGQKPCICTHIDPRYSFSSQILTIPFLWQVFPNLRQIFAEQGLSQHYIHQMATFVPNLISFLPKDISDEFPTYACLLGNILETGGIALSRPDCSFDMAIDLSAVTTYLLEAHPSRTKSDNRENSMIPDDDMTGDDEVMEVALDRKLDQQICNAIDTHFLLQLTNILFRDISSANGSDYGPDDREVAAVGAVCGFLYVIFNTLPLERIMTVLAYRTELVPMLWNFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHVLMIVDNEEYYEREKPLSLKDIRSLIILLRQVLWQLLWVNHTSSANSAKSVPVSTTSKRLSVEAIQQRVSIVVSELLSQLQDWNNRRQFMSPSDFHADGVNDFFISQAVVENTRANEILKQAAFLIPFTSRVKIFTSQLAAARQRHGSQAVFTRNRFRIRRDHILEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKRYVGDISELELYFVVVNNEYGEQTEEELLPGGKNMRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASDEALDRLPTSATCMNLLKLPPYRSKDQLETKLLYAINADAGFDLS. 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04136 1032 Gene3D Hect, E3 ligase catalytic domain 796 875 - -
Seca6g04136 1032 ProSiteProfiles HECT domain profile. 691 1032 IPR000569 GO:0004842
Seca6g04136 1032 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g04136 1032 Gene3D Hect, E3 ligase catalytic domain 914 1031 - -
Seca6g04136 1032 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Seca6g04136 1032 Pfam HECT-domain (ubiquitin-transferase) 727 1032 IPR000569 GO:0004842
Seca6g04136 1032 SMART hect_3 689 1032 IPR000569 GO:0004842
Seca6g04136 1032 CDD HECTc 670 1030 IPR000569 GO:0004842
Seca6g04136 1032 SUPERFAMILY Hect, E3 ligase catalytic domain 661 1024 IPR035983 GO:0004842
Seca6g04136 1032 FunFam Putative Ubiquitin-protein ligase E3C 796 875 - -
Seca6g04136 1032 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1032 IPR044611 GO:0000209|GO:0061630
Seca6g04136 1032 FunFam Putative Ubiquitin-protein ligase E3C 914 1031 - -
Seca6g04136 1032 Gene3D Hect, E3 ligase catalytic domains 672 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04136 Seca-Chr6 109077853 109108092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04136 K10589 - gmx:100787467 1837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04136 6 109077853 109108092 Seca6g04136 6 109077853 109108092 ECH
Seca12g00466 12 4073195 4095221 Seca6g04136 6 109077853 109108092 PCT