Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00466 ATGTTCTTCAGCGGCGATCCTTCTACCCGGAAGCGCGTTGATTTGGGAGGTCGCAGCTCAAAGGAAAGGGACAGGAACAACCTGCTAGAACAAACACGAGTAGAACGCAACCGGCGCTTATGGTTGCGCCAGCAGCACTCTGCTGCATTGAAAATTCAGAAATGCTTCAGAGGGAGAAAAGCTGTCAGAACTGAGCAGTCTAAGTTGCGAGAGCAGTTCTATAAAGCCTATGGGAAGTATTGCCAGAATGTAGGCAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGTCAGTTCCTCTATTTCTTTAAGGCAGAAAACGCTGATGATTTTTTAGTTCTTGTGCAAATATGCCGATTGCTTTGGTGGTTTGTTCAAGATAATGGGGATGTTGTGAGACTATTTGCGGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACTATCGAGTAAAGCAATTTGTATATGCTTGTATTCGTGCTCTACATCAGAATAGAAATCAGTTAAAGGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTCTTTTGGAAGCTTTAGTATTGTTAATAGATCCCAAATTACCATGGAGCTGTAAGATAGTAGAATACCTCTTTCAAAACAATGCATCCAGCCTACTCAGAGAGATCATTCTTACAGGAAAGGATAATGCAGAAAATTATTTTTCCATTGGAAAGGGATCGTCATTGGAGCGTGTACTTATGACTGTAATATGTCACATTGGTCAGAAGCCATGTATCTGCTCACATATTAATCCAAGATATAGCTTTGCATCACAAATCATTACAATTCCTTTCTTGTGGCATCTTTTCCCAAACTTAAAACAGGTTTTTGCAGCAAAGGACCTAAGCCAATGTTACATTCATCAAATGGCAATATTTGGGCAAAATCTGATCAATTTGCTACCTAAAGATATATCAAAGGAATTTCCTAGCTATGCCTGTATGCTTGGAAATATATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTGACTGTTCATTTGATGTGGCCGTAGACCTTGCTGCTGTCACTATGTTTTTGCTGGAGGCACTCCCATCTGTCAAAACTTCCAATAGTAGAGAAAGTTCTATGATTTCTGAGGATGATATGGCTGGAGATGATGGAGTCATGGAGGTAGCTTTAGATAGGAAATTGGAGCAGCAAATTTATAATGCCATAAATCCTCGTTTCCTTTTGCAACTGACAAATATACTATTTAAAGAGATATCATCTGTCAATGGTTCAAATTATGGACCAGATGATAGAGAGGTTACATCTGTTGGTGCAGTTTGTGGATTTTTATATGTTACCTTCAGCAAACTGCCACTTGAACGGATTATGACTGTGCTCGCTTACAGAACTGAACTTGTTCCAATGCTTTGGAACTTTATGAAGCGGTGCCATGAGAACAAGAATTGGTCATCTTTGTCGGAGCGGATATTATACCTCTCAGGTGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATAGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCTCTGTCACTGAAGGATATTAGAAGCCTCATCATTATATTGAAACAGGCTCTGTGGCAGCTACTATGGGTGAATCACACGGCATCTTCTAATTTGGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGAGTCGTTCGGTTCAGGCCATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAACAGGCGGCAGTTTACGTCACCCAGTGACTTCCACGCTGATGGGGTGAATGACTCCTTTGTCTCTCAGGCTGTAATAGAAAATACAAGAGCAAATGAAATTTTAAGGCAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTTCTCAACTAGCAGCAGTTAGACAAAGACATGGATCTCAGGCTGTATTTACTAGAAACCGGTTCAGAATAAAACGGGATCGTATTTTGGAAGATGCTTATAATCAAATGAGTCAATTGTCAGAAGATAATCTTCGGGGATTGATTCGTGTGACTTTTATCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGGATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACACGAACAACATTTCCAGTTTTTCCGCTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACATTTTGCTACATTCTTCTTGAGCAAGTTGAAACAAAAGTACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTGAAGCATTATGGAGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATTTGGAGAGCAAACAGAGGAGGAACTGCTTCCTGGAGGAAGGAACCTACGTGTCACCAACGAGAATGTCATTACTTTTATCCACCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCTCATTTCTTGAGGGGATTTCAGCAACTTGTTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGGTTTTTATTAATAAATGTTAG 2736 0.4017 MFFSGDPSTRKRVDLGGRSSKERDRNNLLEQTRVERNRRLWLRQQHSAALKIQKCFRGRKAVRTEQSKLREQFYKAYGKYCQNVGRNSFGPDSDFLCQFLYFFKAENADDFLVLVQICRLLWWFVQDNGDVVRLFAGVDYSSTCALVNYRVKQFVYACIRALHQNRNQLKDQLLLTPEELNVSAIPLLEALVLLIDPKLPWSCKIVEYLFQNNASSLLREIILTGKDNAENYFSIGKGSSLERVLMTVICHIGQKPCICSHINPRYSFASQIITIPFLWHLFPNLKQVFAAKDLSQCYIHQMAIFGQNLINLLPKDISKEFPSYACMLGNILETAGIALSHPDCSFDVAVDLAAVTMFLLEALPSVKTSNSRESSMISEDDMAGDDGVMEVALDRKLEQQIYNAINPRFLLQLTNILFKEISSVNGSNYGPDDREVTSVGAVCGFLYVTFSKLPLERIMTVLAYRTELVPMLWNFMKRCHENKNWSSLSERILYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILKQALWQLLWVNHTASSNLVKSVPVSSASKSRSVQAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDSFVSQAVIENTRANEILRQAPFLIPFTSRVKIFSSQLAAVRQRHGSQAVFTRNRFRIKRDRILEDAYNQMSQLSEDNLRGLIRVTFINEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFRFLGTLLAKAMFEGILVDIHFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYGGDISELELYFVIVNNEFGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLVQKDWIDMFNEHELQVFINKC. 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00466 911 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00466 911 Pfam HECT-domain (ubiquitin-transferase) 727 908 IPR000569 GO:0004842
Seca12g00466 911 FunFam Putative Ubiquitin-protein ligase E3C 796 875 - -
Seca12g00466 911 SUPERFAMILY Hect, E3 ligase catalytic domain 660 908 IPR035983 GO:0004842
Seca12g00466 911 Gene3D Hect, E3 ligase catalytic domains 672 908 - -
Seca12g00466 911 ProSiteProfiles HECT domain profile. 691 911 IPR000569 GO:0004842
Seca12g00466 911 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 908 IPR044611 GO:0000209|GO:0061630
Seca12g00466 911 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Seca12g00466 911 SMART hect_3 689 911 IPR000569 GO:0004842
Seca12g00466 911 Gene3D Hect, E3 ligase catalytic domain 796 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00466 Seca-Chr12 4073195 4095221 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00466 K10589 - gmx:100789933 1621.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00466 12 4073195 4095221 Seca12g00466 12 4073195 4095221 ECH
Seca12g00466 12 4073195 4095221 Seca6g04136 6 109077853 109108092 PCT