Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g04041 | ATGGGTGTTTTCACTTTCGAGGACGAGACCACTTCTATTGTAGCTCCAGCAAGGCTTTACAAAGCTCTAGTTAAAGATTCTGATAACCTCATCCCAAAGTGTGTTGAGGCCATTCAGAGTGTTGAAATCCTTGAAGGAAATGGTGGCCCCGGAACCATCAAGAAGCTCACTTACCTTGAAGCTACCCCTGCTGCTGTGCCTCCTACTAGGCTTTTCAAAGCCATGTCAATAGATTTTCACAACCTCTTTCCCAAGATTGTGGAACCCATCCAGAGTATTGAATTCACTGAAGGAACTGGTGGTGCTGGAACCATCAAGAAGCTCACCACCATTGAAGGTGGCCAAACAAAGTATGTGCTACACAGAGTGGATGAAATTGATGAGGTGAAGTTTGTATACAACTTCAGCATAATTGGGGGAACTGGCTTGGCTGACACATTGGAGAAGGTCCAATTCGAGAGCCAATTGGTGGAAGGCCCAAATGGAGGGTCCATTAGGAAGGTACATGTCCAGTATTTCACCAAAGGAGATGCTACGATGAGTGAGGAGGAGCTGAAGGCTGGTCAGGCCAAGGCCGTTGCTCCTACTAGGCTTTATAAAGCCATGGCATTAGATTTTCATAACCTCTTCCCCAAGATTGTGGATGCTATCCAGAGTGTTGAAATCATTGAAGGAAATGGTGGTGCTGGAACCATCAAGAAGATCACATTGGTTGAAGCTCCAGCTAAACTCTACAAAGCTCTTGCAAAAGATGCTGACACTATCATCCCAAAGGTGATTGAGGCCATCCAGAGTGTTGAAATCGTTGAAGGAAATGGAGGGCCCGGAACCGTCAAGAAGCTATCCATTGTTGAAGATGGCAAAACGAGCTATGTGTTGCACAAAGTTGAAGCAATCGATGAGGCAAACTTGGGATATGACTACAGCTTAGTGGGAGGGACTGGGTTGGATGAAAGTTTAGAGAAAGTGTCATTCGAGACTAAAGTGGTGGCTGGGCCTGATGGTGGGTCCATTGGGAAGGTCTCAGTGAAATACCACACAAAAGGCGATGCGGCCCTATCAGATGCAGTGCTTGCTCCTGCTAGACTATACAAAGCCATAGTCCTGGATTCTAGCAATGTCTTCCCAAAAGCTTTATCAAAATTCGTTAAAAGTATTGAAATCATTGAAGGAGATGGAGGACCAGGATCCATTAAGAAGCTTACTCTTGTTGATGGTAAATTAAGAGGATATGTGAAGCACAAGGTGGATGTGGTTGACCCTGAAAACTACGTGTACCACTATACAATAATTGAAGGCACTGCTTTGTCAGAACCATTGGAAAAGATCTCATATGAGTACAAATCAGAGGCAAGTCCTGATGGAGGATCCCTCATCAAATCCAAAACCAAATACTACACCAAAGGTGATGCGCAGCTTACGGAAGAGTTTCTGAAGGGTAGCAAGGAAATGTCTGTTGGATTCACCAAGGCTGTTGAGGATTATCTTTTGGCTAATCCTGATTACAACTAA | 1512 | 0.4464 | MGVFTFEDETTSIVAPARLYKALVKDSDNLIPKCVEAIQSVEILEGNGGPGTIKKLTYLEATPAAVPPTRLFKAMSIDFHNLFPKIVEPIQSIEFTEGTGGAGTIKKLTTIEGGQTKYVLHRVDEIDEVKFVYNFSIIGGTGLADTLEKVQFESQLVEGPNGGSIRKVHVQYFTKGDATMSEEELKAGQAKAVAPTRLYKAMALDFHNLFPKIVDAIQSVEIIEGNGGAGTIKKITLVEAPAKLYKALAKDADTIIPKVIEAIQSVEIVEGNGGPGTVKKLSIVEDGKTSYVLHKVEAIDEANLGYDYSLVGGTGLDESLEKVSFETKVVAGPDGGSIGKVSVKYHTKGDAALSDAVLAPARLYKAIVLDSSNVFPKALSKFVKSIEIIEGDGGPGSIKKLTLVDGKLRGYVKHKVDVVDPENYVYHYTIIEGTALSEPLEKISYEYKSEASPDGGSLIKSKTKYYTKGDAQLTEEFLKGSKEMSVGFTKAVEDYLLANPDYN. | 504 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g04041 | 503 | ProSitePatterns | Pathogenesis-related proteins Bet v I family signature. | 433 | 465 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | SUPERFAMILY | Bet v1-like | 359 | 503 | - | - | |
| Seca6g04041 | 503 | FunFam | Major pollen allergen Bet v 1-A | 238 | 356 | - | - | |
| Seca6g04041 | 503 | CDD | Bet_v1-like | 235 | 359 | - | - | |
| Seca6g04041 | 503 | PANTHER | - | 240 | 355 | - | - | |
| Seca6g04041 | 503 | SUPERFAMILY | Bet v1-like | 241 | 356 | - | - | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 454 | 470 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 488 | 498 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 394 | 403 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 410 | 429 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 347 | 367 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 370 | 380 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | PRINTS | Major pollen allergen Bet V1 signature | 429 | 442 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | CDD | Bet_v1-like | 358 | 496 | - | - | |
| Seca6g04041 | 503 | FunFam | Major pollen allergen Bet v 1-A | 64 | 194 | - | - | |
| Seca6g04041 | 503 | SUPERFAMILY | Bet v1-like | 193 | 240 | - | - | |
| Seca6g04041 | 503 | Gene3D | - | 1 | 62 | IPR023393 | - | |
| Seca6g04041 | 503 | FunFam | Major pollen allergen Bet v 1-A | 1 | 63 | - | - | |
| Seca6g04041 | 503 | Pfam | Pathogenesis-related protein Bet v 1 family | 237 | 352 | IPR000916 | GO:0006952 | |
| Seca6g04041 | 503 | Pfam | Pathogenesis-related protein Bet v 1 family | 1 | 60 | IPR000916 | GO:0006952 | |
| Seca6g04041 | 503 | Pfam | Pathogenesis-related protein Bet v 1 family | 359 | 499 | IPR000916 | GO:0006952 | |
| Seca6g04041 | 503 | Pfam | Pathogenesis-related protein Bet v 1 family | 64 | 184 | IPR000916 | GO:0006952 | |
| Seca6g04041 | 503 | CDD | Bet_v1-like | 65 | 194 | - | - | |
| Seca6g04041 | 503 | Gene3D | - | 358 | 503 | IPR023393 | - | |
| Seca6g04041 | 503 | Gene3D | - | 241 | 357 | IPR023393 | - | |
| Seca6g04041 | 503 | Gene3D | - | 63 | 192 | IPR023393 | - | |
| Seca6g04041 | 503 | Gene3D | - | 193 | 240 | IPR023393 | - | |
| Seca6g04041 | 503 | FunFam | Major pollen allergen Bet v 1-A | 357 | 503 | - | - | |
| Seca6g04041 | 503 | SUPERFAMILY | Bet v1-like | 2 | 64 | - | - | |
| Seca6g04041 | 503 | ProSitePatterns | Pathogenesis-related proteins Bet v I family signature. | 313 | 345 | IPR024949 | GO:0004864|GO:0009738|GO:0010427|GO:0038023 | |
| Seca6g04041 | 503 | SUPERFAMILY | Bet v1-like | 60 | 193 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g04041 | Seca-Chr6 | 108094545 | 108119359 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g04041 | - | - | mtr:11416844 | 327.02 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca6g04041 | 6 | 108094545 | 108119359 | Seca6g04041 | 6 | 108094545 | 108119359 | ECH | |
| Seca6g04041 | 6 | 108094545 | 108119359 | Seca12g00376 | 12 | 3281318 | 3282834 | PCT |