Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00376 ATGGGAGTCACAACCTATACTCTGGATTATTCATCCTCTGTTGCACCATCACGCATGTTCATGGCCTTGATCATAGACTCTAGAAATTTGCTTCCAAAGCTCTTGCCACAGTTTGTTAAAGATGTCAATGTAATCCAAGGAGATGGAGATGCTGGAAGCATTGAACAAGTTAACTTCAATGAAGCTAGCTCCTTCAAATATCTGAAACACAGGATTGATGCACTTGATAAGGAGAACTTGATTTGCAAATACACTATGATTGAAGGGGATCCATTGGGTGACAAGCTTGAGTCTATAGCTTATGAGGTCAAGTTTGAGGCCACTAATGATGGAGGTTGCCTCTGTAAAATGACCAGCAATTACAAGACCATTGGTGACTTTGATGTTAAAGAGGAAGAAGTAAAGGAAGGGAGGGAAAGCACCATTGGAATTTACAAAGTTGTGGAGTCATACCTGTTGGAGAACCCACAAGTCTATGCTTAA 483 0.4079 MGVTTYTLDYSSSVAPSRMFMALIIDSRNLLPKLLPQFVKDVNVIQGDGDAGSIEQVNFNEASSFKYLKHRIDALDKENLICKYTMIEGDPLGDKLESIAYEVKFEATNDGGCLCKMTSNYKTIGDFDVKEEEVKEGRESTIGIYKVVESYLLENPQVYA. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00376 160 SUPERFAMILY Bet v1-like 2 159 - -
Seca12g00376 160 FunFam Major pollen allergen Bet v 1-A 1 159 - -
Seca12g00376 160 CDD Bet_v1-like 5 152 - -
Seca12g00376 160 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Seca12g00376 160 Gene3D - 1 160 IPR023393 -
Seca12g00376 160 PANTHER - 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00376 Seca-Chr12 3281318 3282834 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00376 - - gmx:100500506 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00376 12 3281318 3282834 Seca12g00376 12 3281318 3282834 ECH
Seca6g04041 6 108094545 108119359 Seca12g00376 12 3281318 3282834 PCT