Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04035 ATGCTTGTGGCATTGCTCTTGCTGCTGGCATGGAGCAATGCTGTGAGTGTCAATGGAGATGGTGAGCAATGTGGTTTCAATCCAAAACTAGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTGAATACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAGGGTGGTGCTCAGCTGTATGTGCCCCCAGGAAAATGGCTCACTGGCAGTTTCAATCTCACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGAAGTTGTTGAACCTTTACCTTCTTATGGCCGAGGGCTGGAAGTCCCAGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTCATAACAGGTGATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAACTCACATTCCTTGAACCATAGCCGCCCTCATCTGATTGAACTTGTAGCATCTGATTATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTCAAAATGTTTCAATCTCTACTCCTCCAGAATCCCCTTACACAGTTGGTATAGTTCCAGATTCTTCTGATAAAGTTTGTATAGAAGATTGTGTCATTGCTATGGGATTTGATGCAATTTCTCTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCCACTGAGAATGTACACATCAGAAGGGTGCATCTTCAAGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAACTGTTCTAGTGGAGCATGTTCATATTTTCAACTCAAATAGTGGCATTGAATTCAGAACCACCAAAGGCAGAGGTGGTTATATGAAAGAAATTGTTATATCAGACATACAAATGGAGAATATCTATACAGCAATTGCTGCCACAGGTCATTGTGGTTCTCATCCTGATGACAAATTTGATCCAAATGCTCTTCCAATTTTGGATCAAATTACCTTGAAGGATGTTACTGGCACAAATATTACCATTGCTGGAAGCTTTACTGGAATAGAGGAATCCCCCTTCACTAACATATGCCTTTCCAACATAACCTTGTCTACAAATTCTGTTTCTCCCATTACATGGGAATGCTCAAGTGTCTATGGATTTTCAGACTCTGTGCTCCCTGAACCTTGTCCAGACCTTAGGAACCCCTCAAATTCTTCCTCATCCTGTTACTACCTGCTGAGTATAAGTGGAGAAACTGCAGTGCTTTGA 1356 0.4248 MLVALLLLLAWSNAVSVNGDGEQCGFNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWEVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVITGDNGTIDGMGMVWWEWYNSHSLNHSRPHLIELVASDYVVVSNLTFLNAPAYSIHPVYCSNVHIQNVSISTPPESPYTVGIVPDSSDKVCIEDCVIAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLQAFSGSALAFGSDMSGGISTVLVEHVHIFNSNSGIEFRTTKGRGGYMKEIVISDIQMENIYTAIAATGHCGSHPDDKFDPNALPILDQITLKDVTGTNITIAGSFTGIEESPFTNICLSNITLSTNSVSPITWECSSVYGFSDSVLPEPCPDLRNPSNSSSSCYYLLSISGETAVL. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04035 451 Gene3D - 27 414 IPR012334 -
Seca6g04035 451 Pfam Glycosyl hydrolases family 28 134 413 IPR000743 GO:0004650|GO:0005975
Seca6g04035 451 PANTHER PECTIN LYASE-RELATED 6 438 - -
Seca6g04035 451 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04035 Seca-Chr6 108074696 108078170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04035 1 439 Glycoside Hydrolase AT3G16850 64.091 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04035 - - gmx:100777503 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04035 6 108074696 108078170 Seca6g04035 6 108074696 108078170 ECH
Seca12g00373 12 3266534 3269495 Seca6g04035 6 108074696 108078170 PCT