Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00373 ATGCTAGTGGCATTGCTCTTGCTGCTGGCTTTGAGCAATGAGGTCAAGGTGAATGGTGATAATGGTGGTGGTAGGCAATGTGAGTTTAATCCAGCACTAAAACCAAGACCACATAGTGTCTCCATTTTGGAGTTTGGTGCTGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTTTATGTACCACAGGGAACATGGCTGACTCAAAGTTTCAATCTTACTAGCCACCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCCTTACCTTCTTATGGCCGGGGAATTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACAAGATGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATTGGCTTGGTGGGAATCATTTAACTCTCATTCCCTGAACTACAGCCGTCCTCATCTGGTTGAATTAGTGGCATCCAATGATGTGGTAGTTTCAAATCTTACATTATTGAACGCTCCTGCATATAGCATCCACCCAGTTTATTGTAGCAATGTACATATTCATAATATTTCAATATTTGCTCCTCCAGAATCCCCATATACTCTTGGCATTGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTATCATTGCCACTGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGATGAATATGGTATTGCCTATGGCAGGCCAACAGAAAATGTACACATAAGAAGGGTGCATCTGCAAGCTTCTTCTGGCTCTACTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATGTTGTTGTGGAGCATGTTCATCTTTCCAACTCAAAGGGTGGCATTGAGTTCAGAACCACCCGCGGCAGAGGTGGTTATATGAAGGAAATAATCATATCAGACATAGAAATGAAGGATATATTCACAGCAATTGCTGCCAAAGGTCATTGTGGGTCTCACCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGATCACTTTATTTTGCAAGATATTATTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCCTTCACTAACATATGCCTTTCCAATATCACATTGTCTATAAATTCTGCTTCCTCAGTTACTTGGGAATGCTCAAATGTCTCTGGATTTTCAGATTCTGTTCTCCCCAAACCCTGTCCTGCTCTTGAGAACCCTTCAGATTATTCTTCCTCCTCATTCTGCCTCTCCCTACTGAGTATCAAAGGAAAAACTGCAATCCTGTGA 1371 0.4209 MLVALLLLLALSNEVKVNGDNGGGRQCEFNPALKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPQGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPFHWEVVDPLPSYGRGIEVPGGRYQSLINGYMLQDVVITGNNGTIDGMGLAWWESFNSHSLNYSRPHLVELVASNDVVVSNLTLLNAPAYSIHPVYCSNVHIHNISIFAPPESPYTLGIVPDSSDHVCIEDCIIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTLAFGSDMSGGISNVVVEHVHLSNSKGGIEFRTTRGRGGYMKEIIISDIEMKDIFTAIAAKGHCGSHPDDKFDPNALPLLDHFILQDIIGTNITIAGSFAGLQESPFTNICLSNITLSINSASSVTWECSNVSGFSDSVLPKPCPALENPSDYSSSSFCLSLLSIKGKTAIL. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00373 456 PANTHER PECTIN LYASE-RELATED 4 436 - -
Seca12g00373 456 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Seca12g00373 456 SUPERFAMILY Pectin lyase-like 33 431 IPR011050 -
Seca12g00373 456 Gene3D - 29 422 IPR012334 -
Seca12g00373 456 SMART pbh1 234 255 IPR006626 -
Seca12g00373 456 SMART pbh1 207 233 IPR006626 -
Seca12g00373 456 SMART pbh1 184 206 IPR006626 -
Seca12g00373 456 SMART pbh1 268 290 IPR006626 -
Seca12g00373 456 SMART pbh1 296 317 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00373 Seca-Chr12 3266534 3269495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00373 3 436 Glycoside Hydrolase AT3G06770 64.302 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00373 - - gmx:100802343 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00373 12 3266534 3269495 Seca12g00373 12 3266534 3269495 ECH
Seca12g00373 12 3266534 3269495 Seca6g04035 6 108074696 108078170 PCT