Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03976 ATGGATGCAAAACCTGCTCAAGCAGCTGCTTCAGAACCTTTGAAGTATCAGACTTGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTGAAGAATATTGACGGTGTTTTCACTGCAACAATCGACCCACAACAGCAGAAAGTAACAGTCACTGGAAGTGTTGGTGTTGAGACCCTTCTCAGGAAGCTGGTCAGAGCCGGAAAACACGCCGAGATTTGGCCGGAGAATCTCGACGGGAAGGGAAAAAGCTCTGTCAAAGCGAAGAAAAACGATAATGGAACAAGAGAGCCACAAAGCTTGGAAAACAAGGGAACTGAAAATGCTGCCAAGTGTGAGAATGAAAGCAAGAGAAGCAACTCAAAAACCGGCGACGGCTCGCCGGAAAAATCTCCGGCCGGTGACAAGGTTCTCCCGGAGGGTGGTCAGAGCGACGGTGGTGGAGGGGGTTCTGGTAAGAAGAAGAAAAAGAAAGGTCAGAGTGGTGGCAATGGAAGCAATGGTGTGAGTTCAGCATCCACAAGTGGACCTGCACACAGTGGATTCCAGCTCCAGAATCCTGGACAGGTTGTGGGCCAGCAATTGGGCCAAGTGAATCTGAGCCCTACACGTCAGCAATCATTCTCGTACCCAGAAACTGGTTACCCTCCAATGGTTTATGTGACAGCTTATAACAGGTTATATCCCATGGGAAGAAATGGTGGTCCTTGTTACTATGTTCCTCCTTCACCCTACATGTGTGCAGGCCTGGATCATGATGGTACTTATCAATTTCAATCAGCACCGTTGGTTTCCTTTGAGATCTTCAGTGATGAAAATGCTAATGGGTGTTCCATTATGTGA 864 0.4745 MDAKPAQAAASEPLKYQTWFLKVSIHCEGCRRKVKKVLKNIDGVFTATIDPQQQKVTVTGSVGVETLLRKLVRAGKHAEIWPENLDGKGKSSVKAKKNDNGTREPQSLENKGTENAAKCENESKRSNSKTGDGSPEKSPAGDKVLPEGGQSDGGGGGSGKKKKKKGQSGGNGSNGVSSASTSGPAHSGFQLQNPGQVVGQQLGQVNLSPTRQQSFSYPETGYPPMVYVTAYNRLYPMGRNGGPCYYVPPSPYMCAGLDHDGTYQFQSAPLVSFEIFSDENANGCSIM. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03976 287 Gene3D - 15 80 - -
Seca6g03976 287 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 10 287 - -
Seca6g03976 287 MobiDBLite consensus disorder prediction 82 104 - -
Seca6g03976 287 SUPERFAMILY HMA, heavy metal-associated domain 15 82 IPR036163 GO:0046872
Seca6g03976 287 CDD HMA 21 79 IPR006121 GO:0046872
Seca6g03976 287 Pfam Heavy-metal-associated domain 23 74 IPR006121 GO:0046872
Seca6g03976 287 MobiDBLite consensus disorder prediction 168 192 - -
Seca6g03976 287 ProSiteProfiles Heavy-metal-associated domain profile. 16 79 IPR006121 GO:0046872
Seca6g03976 287 MobiDBLite consensus disorder prediction 115 131 - -
Seca6g03976 287 MobiDBLite consensus disorder prediction 82 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03976 Seca-Chr6 107460972 107462754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03976 - - gmx:102666396 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03976 6 107460972 107462754 Seca6g03976 6 107460972 107462754 ECH
Seca12g00328 12 2932037 2933643 Seca6g03976 6 107460972 107462754 PCT