Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00328 ATGGATGCAAAGTCTCCTTATTTTCCCTCAGAAACATTGAAGTATCAGACATGGTTCTTGAAAGTTTCTATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTACAGAGCATTGATGAGAATTTAAGGTGTTTCATAACATTTGCAGGGGTTTTTACTACCACAATCGATCCACAACAGCAGAAAGTAACAGTCACTGGAAGTGTTGGTATTGAGACACTGATAAGGAAACTGCTCAAAGCTGGAAAACATGCCGAGGTTTGGCCGGAGAATCTCACCGTGAAGGGTACCTCCGGTAAAGCAAAGAAGAAGAAGAATAACGAACAAAAAGACCCAGAAAGCGAGAAGAACCGTTCTGCTGCAAATGCAGAATCTAAACCCAGCTCTGGCAAAAACAGGGGAATTGAAAGTGCTGCCAAGTGCAATGGTGAGAGCAAAAGTAGCAATAACTCAAAAAATGGGACCATTACCAACTCGCCGGAAAAATCTCCGGCAGGTGGTAAGGAACCGGAGAAGGACAACAAAGGTGGTGAAAGTGAAGGAGGTGATTCTGCCGGCTCTGGTAAGAAAAAGAAAAAGAGAGATGAGAGTGAGAGTGTTGGTGGTAGTGGGAGCAATGGGTTGAGTTCAGGTTCAGGATCGAACAGTGCACCTGCACACACTGGATCCCAGGTTGTGGGGCAGTTGAATCTGAGCCCTACACGTCAGCAATCATGCCCGTACAACCCAGAAACGTATTATCCTTCTCCTATGGTGTATCTTGCAACATACAACAGATTATGTCCTATGGCTATGGGTGGTCCTTGTTACTATGTTCCACCATCACCCTACATGTATGCAGGACTTGATCATGACCCTTATCAGTTGCAATCAACACCGTTGGTTTCCTTCGAGATCTTCAGTGATGAAAATGCTAATGGTTGTTCTGTTATGTGA 942 0.4448 MDAKSPYFPSETLKYQTWFLKVSIHCEGCRRKVKKVLQSIDENLRCFITFAGVFTTTIDPQQQKVTVTGSVGIETLIRKLLKAGKHAEVWPENLTVKGTSGKAKKKKNNEQKDPESEKNRSAANAESKPSSGKNRGIESAAKCNGESKSSNNSKNGTITNSPEKSPAGGKEPEKDNKGGESEGGDSAGSGKKKKKRDESESVGGSGSNGLSSGSGSNSAPAHTGSQVVGQLNLSPTRQQSCPYNPETYYPSPMVYLATYNRLCPMAMGGPCYYVPPSPYMYAGLDHDPYQLQSTPLVSFEIFSDENANGCSVM. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00328 313 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 11 313 - -
Seca12g00328 313 SUPERFAMILY HMA, heavy metal-associated domain 15 91 IPR036163 GO:0046872
Seca12g00328 313 MobiDBLite consensus disorder prediction 103 122 - -
Seca12g00328 313 MobiDBLite consensus disorder prediction 167 201 - -
Seca12g00328 313 MobiDBLite consensus disorder prediction 92 225 - -
Seca12g00328 313 ProSiteProfiles Heavy-metal-associated domain profile. 15 92 IPR006121 GO:0046872
Seca12g00328 313 Gene3D - 14 89 - -
Seca12g00328 313 Pfam Heavy-metal-associated domain 22 86 IPR006121 GO:0046872
Seca12g00328 313 CDD HMA 20 88 IPR006121 GO:0046872
Seca12g00328 313 MobiDBLite consensus disorder prediction 202 225 - -
Seca12g00328 313 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00328 Seca-Chr12 2932037 2933643 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00328 - - tpra:123882121 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00328 12 2932037 2933643 Seca6g03976 6 107460972 107462754 PCT