Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03971 ATGACCATGGAATACAGAACCCTAGAACTCAACATCATATCCGCAAAGGATCTCAAAGATGTTAATCTCTTCTCCAAGATGGACGTATACGCCGTCGTTTCACTCTCCGGCGACCCTCTCCATCCTCAGACCGCCACCACTCACGTCCACAAAGACGCCGGCACCAACCCTACTTGGAACTTCCCCGCCAAATTCGTCGTCAACGAATCTCTCGTGCAACAGAACAGGCTCTCCCTCGAGATCAAGCTCGTCTCTGACCGCACCCTCGGCGACACCGTCATCGGCACCGTCCATGTTCCTCTCAAGGAGCTTCTCGACAATCCCGCCGACGGTGACTCCTTCCGGCAAGTCAGTTACCAGGTGAGGAAAACCTCAGGGAAGGCCAAAGGATCCTTCAACTTCTCATACAAATTCGGCGAACGTGTCGACGCTCCGGCGACGAAGTCGGCGTCGAAACAGGAACCGGTTATGGCTTATCCGCCTACAGCGGCGGGGTCTAGTTCGGTGCCGTACGGGACGGGATACGCTCCTCCGCCGCCGCAGTATGCGGCGGGATATGGCTATCCTCCGCCGCAGCAGGCGTATGGCGGTTATCCACAGGCTCAACCGGGTTATGGATACCCACCGCAACAGGGTTATGGGTACCCGCCACAGCAGGGTTATGGGTACCCTCCACAACCGGGTTACGGGTATCCACCGGTTCAACAACCGCCGAAGAAGAATAACAAGTTTGGAATGGGATTGGGAGCAGGGTTGCTTGGCGGTGCGCTGGGTGGGATGTTGATTGGGGATATGGTATCTGATGCTTCTGCTTATGATGCTGGATATGATGCTGGCTTTGATGATGCTGGTGGATTTGATTTTTAA 867 0.5525 MTMEYRTLELNIISAKDLKDVNLFSKMDVYAVVSLSGDPLHPQTATTHVHKDAGTNPTWNFPAKFVVNESLVQQNRLSLEIKLVSDRTLGDTVIGTVHVPLKELLDNPADGDSFRQVSYQVRKTSGKAKGSFNFSYKFGERVDAPATKSASKQEPVMAYPPTAAGSSSVPYGTGYAPPPPQYAAGYGYPPPQQAYGGYPQAQPGYGYPPQQGYGYPPQQGYGYPPQPGYGYPPVQQPPKKNNKFGMGLGAGLLGGALGGMLIGDMVSDASAYDAGYDAGFDDAGGFDF. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03971 288 MobiDBLite consensus disorder prediction 193 227 - -
Seca6g03971 288 Pfam C2 domain 7 109 IPR000008 -
Seca6g03971 288 CDD C2_SRC2_like 7 134 IPR044750 GO:0006952
Seca6g03971 288 Gene3D C2 domain 3 159 IPR035892 -
Seca6g03971 288 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Seca6g03971 288 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 140 IPR035892 -
Seca6g03971 288 PANTHER INGRESSION PROTEIN FIC1 3 265 - -
Seca6g03971 288 SMART C2_3c 7 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03971 Seca-Chr6 107428387 107429253 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03971 - - lja:Lj6g3v1444480.1 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03971 6 107428387 107429253 Seca6g03971 6 107428387 107429253 ECH
Seca12g00318 12 2874805 2875626 Seca6g03971 6 107428387 107429253 PCT