Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00318 ATGGACTACAGAACCTTAGAACTCAACCTCTCTTCAGCAAAGGATCTCAAAAATGTTAACCTCTTCACTAGGATGAACGTTTACGCCGTCGTTTCAATCTCTGGTGATCCCAACCACCACCACCACAAGACCAAGACCCCCGTCGACAGAAACGCCGGCAAGAACCCTACCTGGAACTTCCCTATCAAACTCACCATCAACGAATCCCTCGCGCGTCAGAATCGCTTGACTCTCGAAATCAAGCTCCGATGCGAGCGCAGCCTCTCCACCGACAAGGACATCGGCACCGTCCACGTCCCTCTCAAGGAGCTTCTCGACCAAACCGGCGACGGAAAATCCTTCCAGCACGTCAGTTACCAGGTCAGAAAACCTTCCGGCAAGCCAAAAGGGGCTTTGAGTTTCTCCTACAAATTCAGCGAAAATCTCGCTGCTCCGGCGAACCCCAAGGCGGAGCCCGTCGCGGTTTATCCTCCTCCGGCGGCGGGATCCACTTCTGCGCCATATGCTGAGCCCTACCCCGCACAGCCGCCACAATATGCAACCGGATACGTGTACCCGCCGCCGCCTCAGGCGTACGGTGGATATCAACAACCTCAAACGGGTCATGGATATCCGCAACAAGCCGGGCATGGATACCCGCAACAAGGCGGGTACGGGTACCCTCCTGCTCCGGCGCAGAGAGCAGGGAAGAACAATTTCGGAATGGGATTGGGAGCGGGATTGCTTGGAGGAGCGTTGGGTGGACTTCTGATTGGGGACATGATATCTGATGCAGGTGGTTACGATGCTGGTTTTGGTGATGTTGGTGGTTTTGATTTTTAA 822 0.5474 MDYRTLELNLSSAKDLKNVNLFTRMNVYAVVSISGDPNHHHHKTKTPVDRNAGKNPTWNFPIKLTINESLARQNRLTLEIKLRCERSLSTDKDIGTVHVPLKELLDQTGDGKSFQHVSYQVRKPSGKPKGALSFSYKFSENLAAPANPKAEPVAVYPPPAAGSTSAPYAEPYPAQPPQYATGYVYPPPPQAYGGYQQPQTGHGYPQQAGHGYPQQGGYGYPPAPAQRAGKNNFGMGLGAGLLGGALGGLLIGDMISDAGGYDAGFGDVGGFDF. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00318 273 CDD C2_SRC2_like 5 134 IPR044750 GO:0006952
Seca12g00318 273 Gene3D C2 domain 2 154 IPR035892 -
Seca12g00318 273 PANTHER INGRESSION PROTEIN FIC1 1 252 - -
Seca12g00318 273 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 139 IPR035892 -
Seca12g00318 273 MobiDBLite consensus disorder prediction 35 54 - -
Seca12g00318 273 SMART C2_3c 5 113 IPR000008 -
Seca12g00318 273 MobiDBLite consensus disorder prediction 192 225 - -
Seca12g00318 273 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Seca12g00318 273 Pfam C2 domain 5 114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00318 Seca-Chr12 2874805 2875626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00318 - - aprc:113847350 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00318 12 2874805 2875626 Seca12g00318 12 2874805 2875626 ECH
Seca12g00318 12 2874805 2875626 Seca6g03971 6 107428387 107429253 PCT