Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03970 ATGGAGGAGGAGCCGAGCCAGCTGAAGCGTGCTATGATTGATGCCTCAGCTGGTTCTATTTCGGGTGCTATATCACGAACGGTTACCTCACCCCTTGATGTTATTAAGATTAGGTTCCAGGTTCAACTAGAGCCCACATCTTCATGGGCTTTACTGCGCAAGGATTTGTCTAAACCCTCAAAATATACTGGCATACTTCAAGCGAGCAAAGATATTTTTAGAGAAGAAGGCATACAGGGTTTTTGGCGGGGTAATGTGCCTGCTTTGCTCATGGTTATGCCATATACAGCTATACAATTTACTGTTTTACACAAGTTGAAGACTTTTGCATCTGGTTCTTCTAAGACAGAGAATCACATAAATTTGAGCCCTTATCTATCCTACATAAGTGGGGCATTAGCTGGGTGTGCAGCTACTGTAGGGTCGTATCCCTTTGATCTTCTACGAACCATATTAGCTTCTCAGGGTGAGCCAAAGGTATAA 483 0.4348 MEEEPSQLKRAMIDASAGSISGAISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLSKPSKYTGILQASKDIFREEGIQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHINLSPYLSYISGALAGCAATVGSYPFDLLRTILASQGEPKV. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03970 160 Pfam Mitochondrial carrier protein 14 110 IPR018108 -
Seca6g03970 160 SUPERFAMILY Mitochondrial carrier 9 157 IPR023395 -
Seca6g03970 160 Gene3D Mitochondrial carrier domain 8 160 IPR023395 -
Seca6g03970 160 PANTHER SOLUTE CARRIER FAMILY 25 15 154 - -
Seca6g03970 160 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 109 IPR018108 -
Seca6g03970 160 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Seca6g03970 160 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Seca6g03970 160 PRINTS Mitochondrial carrier protein signature 137 155 IPR002067 GO:0055085
Seca6g03970 160 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03970 Seca-Chr6 107411265 107416616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03970 3 160 Organic Solute Cotransporters AT3G21390 77.848 2.47e-88 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03970 K15108 - gmx:100803750 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03970 6 107411265 107416616 Seca6g03970 6 107411265 107416616 ECH
Seca12g00317 12 2862019 2866577 Seca6g03970 6 107411265 107416616 PCT