Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00317 ATGGAGGAGCCAAGCAAACTGAAGCGTGCCATGATTGATTCCTCGGCTGGGGCAATTTCCGGTGGAATATCTCGGACAGTGACCTCTCCCCTTGATGTTATCAAGATTAGATTTCAGGTTCAACTGGAGCCCACAACTTCCTGGGCTTTACTACGCAAGGATTTGGCTGCAGCTGCGCCATCAAAATATACTGGTATGTTTCAGGCAAGCAGAGATATTCTTAGAGAAGAAGGCGTACAGGGCTTTTGGCGGGGGAATGTACCAGCATTGCTCATGGTTATGCCATACACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGTCAGAGAATCACGTTAATTTGAGCCCTTATCTATCTTATGTCAGTGGGGCATTAGCTGGTTGTGCAGCTACTGTAGGTTCATATCCCTTTGATCTTCTCAGAACTATATTAGCTTCTCAGGGTGAGCCAAAGGTATATCCAAGCATGAGATCAGCTTTCGGTGATATCATCCAGACTCGTGGATTCCAAGGCTTGTATGCTGGATTGTCGCCAACTCTAGTTGAGATTATACCTTATGCAGGCCTACAATTTGGCACATATGATACATTCAAGCGTTGGGCCATGGTAAAATTTCAGTCATTCTATTTTAAGTTTTTAACATCTCATCTTTATTAG 684 0.4342 MEEPSKLKRAMIDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTTSWALLRKDLAAAAPSKYTGMFQASRDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKSENHVNLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPSMRSAFGDIIQTRGFQGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWAMVKFQSFYFKFLTSHLY. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00317 227 Pfam Mitochondrial carrier protein 14 111 IPR018108 -
Seca12g00317 227 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Seca12g00317 227 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Seca12g00317 227 Gene3D Mitochondrial carrier domain 8 226 IPR023395 -
Seca12g00317 227 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Seca12g00317 227 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
Seca12g00317 227 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Seca12g00317 227 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Seca12g00317 227 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Seca12g00317 227 SUPERFAMILY Mitochondrial carrier 9 211 IPR023395 -
Seca12g00317 227 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 110 IPR018108 -
Seca12g00317 227 PANTHER SOLUTE CARRIER FAMILY 25 14 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00317 Seca-Chr12 2862019 2866577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00317 1 212 Organic Solute Cotransporters AT3G21390 76.415 1.93e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00317 K15108 - gmx:100784986 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00317 12 2862019 2866577 Seca6g03970 6 107411265 107416616 PCT