Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03845 ATGGCAACCGAGAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAATGGCCCTCTCATAACGAAGCTGCAACTTTTGGTCCACCATCTCATAACATGGCGACAGAGGATTTGGGTATGCTTATAAACGGCCATAGGTTCCATGGCAGAGGAAAGGATGTGGCACCCAATCGCAGTGGCAGTGCGCCTCCCAGCATGGAAGGCTCATTTTTGGCCATAGAAAACCTATTACCCTTGCAGAACACAACCCAGAATGCAAGCTTGACAAAGCTAAGCAGAGCAGTGCAAGAATGTGAATCTGAAGAACAGTTACGAGCTGATCCCGCTTATTTGGCATATTACAGTTCCAATGTCAACCTGAACCCTAGACTTCCTCCCCCACTTACCTCTTGGGAAAATCGCCATCTAGGGCGTCATATCGGTAGTTTTAGAAATAATTGGGGATTGTCTTATGCAGATCATAGCAGTAAAACTTCTTTACATTTGCCACAAGGGACTCTTTCAACACACAAGGAGGAGTCTGAGGATGATTCACCCCAACAGCCATATGAAAATGAATTAGTTAAGACAAGTGGAATACGGCATAGACCAGATTCAACTTCATTGGTATCACAGCAAAAAAATGTGGTTGATTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAACAAGTCTCTTTCTGTAAGTCATGGACTGGTGGATAAACCAATTGACTTCGAAGCCGGTTCCAGTTCTTCTCATGATCCCCCTGTTACTGCAACAGAGGCTGTCAAACCTACTGCAGGTGCAGGTGATATAAGGTTGTCATCTAGTGTTGACACCAATACCCCTGTTGCAAGTTCATCATCACTTGAATCTACAGCCGGCATGGGTTTTAGTGACTTAGATGTTGCAACTGTTGAGTCTCAACTAAAGGCACTTAGTGTATCTAATCTACCAAATTCAGAAAACCTGAGTTATGAAGAAAAATGGAAGACCAGCTACCAGAACCATTTAATGCAACGACAGGTATTCCAACAACAAAACAATTCATGTGAAGTTCCTAGTGCCAATTCTCAAAGTGTAAACTCTGCCTACATTGGTAGGGAACAGTTTCCTCATAATTCCACCAAGTTCTCAGAGGTCCAGCCACTACTGCAGTCATCTGGCTTTACACCCCCCCTATATGCTACAGCAGCAGCTTATATGACCTCAACAAATCCATTTTACACTAATATGCAGGCCTCAGGCATGTATACTCCACAATATGTTGGTGGATACACTTTAAATCCCACAGCGATTCCTCCATATATTACTGCATACCCTCCTCATGGTGCTGTACCACTTGTTGTTGATGGGGCTACTAGTTCTAGATATACCCCACTAATACCAGGGGTTTCGACTGGGGGAAGCATTTCACATGGAGCTGAAATGGTACATGCAAACAAGTACCTTGGGCAATTTGGATTTCCTATGCAGCCTTCTTTTGGTGATCCTTTTTACATGCAATATCATCAACAACCTTTTATGGAGGGATATGGTATTTCTGGTCATTTTGATCCGCTGACACCTAGAGCAAGTGGTGGTAGCCAAATTAGTCCTTATGATTCACAAAAAAGATCCAGTACTGGTGCTTATTTGGATGATAAAAAATTACATGATCAGAGAACTGGTGGTAATATGAACTCAAGAAGAGGTGGATTGTTGATTCCAAATTATTTTGGACAAATGTCAAATATGGGTTTTGTAATGCAATATCCAAGTTCACCCCTTCCTAGTCCAGTTTTGTCAGGATATCCAGAAGGAAGTCCTGGCCTTCCAGGAGGTAGAAATGAAATAAAACTTTCCCCAGGTTCTGGTAGAAATGGAGGCATATTATCTGGATGGCAAGGTCAGGGATCCTTTGACAGTGCTCATGACCCCAAAATTGTGAATTTTCTTGAAGAGTTTAAATCAGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGGCAAGTAATCTTTTTTTTTACTTCCAGCGCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAACATGTGGTGTTGAAGAGAAAGCATTGGTATTCAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTCGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAGATCAACTGGCTGGTCAGATACTGCCTTTAAGTTTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAACTAGACGGAAATGTTATGAGGTGTGTTCGTGACCAAAATGGGAATCATGTAATACAAAAGTGCATTGAATCTATTCCAACAAAAAAAATCGGCTTTATACTATCTGCATTCCGTGGTCAAGTTGCTGTTCTATCAATGCATCCTTATGGTTGCCGAGTAATACAGAGAGTTCTAGAGCATTGTACAGACGAGGTTCAGTGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTTTTCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGAAAGCCTCAAGAGAGGAGCCAAATTATCAGCAAGCTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTGGAGAAATGTTTGGAATATGGTGATGCCATTGAACGTGAATTGTTAATTGCAGAGATTATCAGGCATGATGAGCATAATGATAATTTATTGACAATGATGAAAGACCAGTTTGCAAATTATGTGGTCCAGAAAGTTATTGATATCTGTTCGGAAAATCAGCGAGCAATGTTGCTTTCTCATGTAAGAGTTCATGCTCATGCTTTGAAAAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGGTGAGTACTCCTACTAG 2979 0.4139 MATESPIRISEAGGKWPSHNEAATFGPPSHNMATEDLGMLINGHRFHGRGKDVAPNRSGSAPPSMEGSFLAIENLLPLQNTTQNASLTKLSRAVQECESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHIGSFRNNWGLSYADHSSKTSLHLPQGTLSTHKEESEDDSPQQPYENELVKTSGIRHRPDSTSLVSQQKNVVDLIQEDFPRTMSPVYNKSLSVSHGLVDKPIDFEAGSSSSHDPPVTATEAVKPTAGAGDIRLSSSVDTNTPVASSSSLESTAGMGFSDLDVATVESQLKALSVSNLPNSENLSYEEKWKTSYQNHLMQRQVFQQQNNSCEVPSANSQSVNSAYIGREQFPHNSTKFSEVQPLLQSSGFTPPLYATAAAYMTSTNPFYTNMQASGMYTPQYVGGYTLNPTAIPPYITAYPPHGAVPLVVDGATSSRYTPLIPGVSTGGSISHGAEMVHANKYLGQFGFPMQPSFGDPFYMQYHQQPFMEGYGISGHFDPLTPRASGGSQISPYDSQKRSSTGAYLDDKKLHDQRTGGNMNSRRGGLLIPNYFGQMSNMGFVMQYPSSPLPSPVLSGYPEGSPGLPGGRNEIKLSPGSGRNGGILSGWQGQGSFDSAHDPKIVNFLEEFKSGKGRRFELSDIIGHIVEFRQVIFFFTSSADQHGSRFIQQKLETCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADQLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFRGQVAVLSMHPYGCRVIQRVLEHCTDEVQCQFIVDEILESVFSLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDAIERELLIAEIIRHDEHNDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHVRVHAHALKKYTYGKHIVARLEHQFGGEYSY. 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03845 992 CDD Pumilio 652 982 IPR033712 GO:0003723
Seca6g03845 992 Gene3D - 638 987 IPR011989 -
Seca6g03845 992 MobiDBLite consensus disorder prediction 538 553 - -
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 774 809 IPR001313 GO:0003723
Seca6g03845 992 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 986 IPR033133 GO:0003723
Seca6g03845 992 FunFam Pumilio homolog 1 isoform 2 636 990 - -
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 847 882 IPR001313 GO:0003723
Seca6g03845 992 MobiDBLite consensus disorder prediction 269 288 - -
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 702 737 IPR001313 GO:0003723
Seca6g03845 992 MobiDBLite consensus disorder prediction 518 559 - -
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 883 918 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 810 846 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 774 809 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 925 960 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 847 882 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 738 773 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 883 918 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 702 737 IPR001313 GO:0003723
Seca6g03845 992 SMART pum_5 666 701 IPR001313 GO:0003723
Seca6g03845 992 SUPERFAMILY ARM repeat 645 983 IPR016024 -
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 919 960 IPR001313 GO:0003723
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 738 773 IPR001313 GO:0003723
Seca6g03845 992 MobiDBLite consensus disorder prediction 241 288 - -
Seca6g03845 992 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g03845 992 MobiDBLite consensus disorder prediction 157 182 - -
Seca6g03845 992 Pfam Nucleic acid binding protein NABP 290 656 IPR012940 -
Seca6g03845 992 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 984 - -
Seca6g03845 992 ProSiteProfiles Pumilio RNA-binding repeat profile. 810 846 IPR001313 GO:0003723
Seca6g03845 992 MobiDBLite consensus disorder prediction 46 66 - -
Seca6g03845 992 MobiDBLite consensus disorder prediction 521 537 - -
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 742 775 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 929 961 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 814 849 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 677 704 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 852 884 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 707 739 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 785 800 IPR001313 GO:0003723
Seca6g03845 992 Pfam Pumilio-family RNA binding repeat 887 921 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03845 Seca-Chr6 105985961 105994674 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03845 K17943 - gmx:100811036 1666.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00758 12 7025282 7034309 Seca6g03845 6 105985961 105994674 PCT