Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00758 ATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGGGGGAAATGGCCATCTCTTAAGGAAGCTGTAACTTTTGGTTCACCATCTCGTGACATGGCAACAGAGGATTTGGGTGTACTTTTAAAGGGCCATAGGTTTCGTGGTAGTGGAAAGGATGTGGTACCCAATCGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTGGCCTCAAAAAACCTATTATCACAGAACGCCACCCATAATGTGAGCTTGGTAACTCTGAACAGAGCTATGCAAAAATATGATACTAGTAAAAGTTCTTTTCATTTGTCACGAGGAGCTCTTGCAACACCCAAGGAGGAGTCTGAGGATGATTCACCCCAACAGCTGTATGATAATGACTTAGACAAGACTAGTGGAATATGGCATAGAAAGGATGCAGCTTCAATGACATCTCAGCACAAAAATGTAATATTGGAAGGTCTTCCCCGCACCATGTCTCCTGTATATAATAAGTCTCTTGGAGTGGTGGACGAACTAATTGACTTGGATGCTGGTTCCAGTTCTTCCCATGACCTGTCTGTCACCACACTAGATTCTGCAAAACCTACCATAGATGCAGATGATATAAGGCTGTCAACTAATGTTGACTCCCCTGCCGCTGTCACAAGCTCATCATCTCTTGAATCCACTGGAAACATGGGCTTTACTGACTTAGACGTTACAATCATTGAATCTCAATTAAGGTCTCTCACTGTATCTAATCTACCAAATTCAGAAAACCAGAGTTATGGAGATGAATGGAAGAACAGCGGCCAGAATAATTTGATTCAACATCAGCAACAAAATAATCCATGCGAAGTTCCTAGCACTAATTCTCAAAGTGAAAAATGTACATATGTTGGTATTGACCAGTTTCTTCACAATCCTGGCAAGTTCTCCTCTGATGTCCAGCCAGTACTGCAGTCATCAGGGTTTACCCCCCCACTACATGCCACAACAGCAGCTTATATGACCTCAACAAATCCATTTTACACTAACTTGCAGGCTTCAGGTGTATATTCTCCGCAATATGTTGGTGGATACCCTTTTAATCCCACAGCTCTTCCTCCATATTTTGCTGCATACCCTCCTCATGGTGCTGTACCACTTCTTGTTGATGGGACTACTGGTTCCAGTTTTACTCTGCAAGCACCAGGGGTTTCTACTGGGGGAAGCATTTCACATGGAGCTGAAATGTTGCCTGCAAGCAAGTTCCTTGGACAATTTGGATTCCCTCTGCAGCCTTCTTTTGGCGATCCTATTTACATGCAATATCATCAGCAAAATTTTCTGGAGGGATATGGTATGTCTGGTCATATGCTGGCACTGAGAGCAAGTATTGGTAGCCAGGTTGGTCCCTTTGATTCCCAAAAAAGGCCCAATAGTGGTGCTTATTTAGATGACAAAAAATCACATCATCAGAGGGGTGGTGCTAATTTAAACTCTAATAGAGGTGGGCTAATTATTCCTAGTTATTTTGGACACCCGCCAAATATGGGTTTTGTAATGCAGTATCCAACTTCCCCACTTTCTAGTCCAGTTTTGTCAGGATACCCACAAGGCAGTCATGGCCTTCCAGGAGGAAGGAATGAAATGAAACTTTCTCCAGTTTCTGGTAGAAATGAAGGAGTATTATCTGGATGGCAAGGTCAAAGGGCCTTTGACAGTTCTCATGACCCCAAAATTGTTAATTTTCTTGAAGAGCTCAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGATATATTGTTGAATTTAGGCAATTCACCATGGTTTTTAACTCCAGCACTGATCAGCATGGGAGCCGATTTATCCAGCAGAAGTTGGAAAGTTGTGGTGTTGAAGAGAAGGCATTGGTGTTCAAAGAGGTTCTTCCACATGCTTCTAAGTTAATGACTGATGTATTTGGTAACTATGTAATCCAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGAACTTGCAAATCGACTTGTTGGTCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGATCTTGAACAGAAAGCTCAGCTAGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGACCAAAACGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACAAAAAAAATTGGCTTTATAATATCTGCATTCCGTGGTCAAGTCGCCATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTGGAGCATTGCTCTGATGAGGTTCAATGTCAGTTTATTGTGGACGAAATATTAGAGTCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACTCAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAACCAAATTATTAGCAAGCTATCAGGGCATATTGTACAATTGAGCCAGCATAAATTTGCATCAAATGTTATTGAGAAATGTTTGGAATATGGTGATACCACTGAAAGGCAGTTGTTTATTTCAGAGATTATTGGGCATGACGAACAAAATGATAACTTATTGATAATGATGAAAGACCAATTTGCAAATTATGTGGTCCAGAAGGTTATTGAGATCTGTTCTGAAAATCAGAAAGCAATATTACTTTCTCGCATAAGAGTTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTACTTGGAGAAGAGCACCAAACACCTGGATCATGA 2787 0.4155 MATESPIRISEAGGKWPSLKEAVTFGSPSRDMATEDLGVLLKGHRFRGSGKDVVPNRSGSAPPSMEGSFLASKNLLSQNATHNVSLVTLNRAMQKYDTSKSSFHLSRGALATPKEESEDDSPQQLYDNDLDKTSGIWHRKDAASMTSQHKNVILEGLPRTMSPVYNKSLGVVDELIDLDAGSSSSHDLSVTTLDSAKPTIDADDIRLSTNVDSPAAVTSSSSLESTGNMGFTDLDVTIIESQLRSLTVSNLPNSENQSYGDEWKNSGQNNLIQHQQQNNPCEVPSTNSQSEKCTYVGIDQFLHNPGKFSSDVQPVLQSSGFTPPLHATTAAYMTSTNPFYTNLQASGVYSPQYVGGYPFNPTALPPYFAAYPPHGAVPLLVDGTTGSSFTLQAPGVSTGGSISHGAEMLPASKFLGQFGFPLQPSFGDPIYMQYHQQNFLEGYGMSGHMLALRASIGSQVGPFDSQKRPNSGAYLDDKKSHHQRGGANLNSNRGGLIIPSYFGHPPNMGFVMQYPTSPLSSPVLSGYPQGSHGLPGGRNEMKLSPVSGRNEGVLSGWQGQRAFDSSHDPKIVNFLEELKSGKGRRFELSDIIGYIVEFRQFTMVFNSSTDQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRKELANRLVGQILPLSLQMYGCRVIQKALEVIDLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKIGFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERNQIISKLSGHIVQLSQHKFASNVIEKCLEYGDTTERQLFISEIIGHDEQNDNLLIMMKDQFANYVVQKVIEICSENQKAILLSRIRVHAHALKKYTYGKHIVARFEQLLGEEHQTPGS. 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00758 928 SUPERFAMILY ARM repeat 605 915 IPR016024 -
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 635 670 IPR001313 GO:0003723
Seca12g00758 928 Gene3D - 571 924 IPR011989 -
Seca12g00758 928 CDD Pumilio 585 914 IPR033712 GO:0003723
Seca12g00758 928 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 570 919 IPR033133 GO:0003723
Seca12g00758 928 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 221 917 - -
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 671 706 IPR001313 GO:0003723
Seca12g00758 928 MobiDBLite consensus disorder prediction 460 491 - -
Seca12g00758 928 SMART pum_5 707 742 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 816 851 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 635 670 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 780 815 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 597 634 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 858 893 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 671 706 IPR001313 GO:0003723
Seca12g00758 928 SMART pum_5 743 779 IPR001313 GO:0003723
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 743 779 IPR001313 GO:0003723
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 597 634 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 675 708 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 747 782 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 864 895 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 785 817 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 718 735 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 640 670 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 820 854 IPR001313 GO:0003723
Seca12g00758 928 Pfam Pumilio-family RNA binding repeat 608 637 IPR001313 GO:0003723
Seca12g00758 928 Pfam Nucleic acid binding protein NABP 333 589 IPR012940 -
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 707 742 IPR001313 GO:0003723
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 780 815 IPR001313 GO:0003723
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 852 893 IPR001313 GO:0003723
Seca12g00758 928 ProSiteProfiles Pumilio RNA-binding repeat profile. 816 851 IPR001313 GO:0003723
Seca12g00758 928 FunFam Pumilio homolog 1 isoform 2 569 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00758 Seca-Chr12 7025282 7034309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00758 K17943 - gmx:100819166 1412.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00758 12 7025282 7034309 Seca6g03845 6 105985961 105994674 PCT