Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03822 ATGCCGCCGGCTCTTGTGGATCCGTTGTTGGCATCTCCTTCGAGCACCGACGCTGTTCCTCGGAAATCGGCGCCGGAGAATCGGCGATTCGGTGATCTTAGAGGCTTACAGTGGCGTATAAATCTTGGGGTGTTGCCTTCTTCATCTTCAAATTCCATTGATCATCTTCGTCGGGTTACTGCGGATTCTAGAAGGAGATATGCCAGTTTGAGAAGGCGCCTCCTTGTTGAACCACATGTTCCAAAGGATGGTGCTAATTCACCCAATCTTGTCATGGACAATCCACTCTCACAAAATCCAGATAGTACTTGGGGTCGCTTTTTTCGCAATGCAGAGCTAGAGAGAATGGTTGATCAGGATTTATCACGATTATACCCAGAACATGGCAGTTATTTCCAGACACAAGGATGCCAAGGCATGTTGAGACGAATTTTATTACTATGGTGTCTCAGGCACCCAGAATGTGGATATAGACAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCATCTTTCAGAAGTTCGGAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGGCCTTTTATGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGGAAATCTCTAGAGTTGGAGGATGAAATTGGCCCCAATGGAAATGCAATGAAAGCCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTGCTAAGTGATGCATATGGAGCTGAAGGTGAACTAGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCTTACTGTATGTTTGATGCCTTAATGAAGGGGGGCCATGGTTCAGTTGCAATGGCCGATTTCTTCTTTTCCTCCCCTGTAGCTGGGTCCCATACTGGCCTGCCTCCTGTGATTGAAGCTTCTACTGCATTGTTTCATTTGTTGTCTCTCGTGGATTCATCTCTACATAGCCATCTTTTTGATCTTGGGGTTGAGCCCCAGTACTTTTCTCTCCGTTGGTTGCGAGTTTTATTTGGACGAGAATTTTCGCTTGACAACCTATTGATAATCTGGGATGAGATCTTTGCATCGGATAATAGCAAAGTGGAAAATAGTGCTGATGACAACGTAGACTATGGGTTCAGGATCTTACATTCACCTCGTGGATCATTTATCTCAGCTATGGCTGTAGCAATGTTACTTCATTTAAGATCTTCACTACTTGCAACTGAAAACCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAAAACATTAATATTGAAAAACTACTAGAGAAGGCTAAATCCTTGCAGACTCTTGCTTTAAGTATTGATATTTCATCCTTGTCACCTTTGTTTGTTGGGTTTCATCACCAAAGTAAAGTGATATCCACAAGATCTGTGTCCTTTCCATCTGAATCCGTGTCTCCGAAAACTCCTCTGAATTCGTTACCTGACAGTTACTGGGAAGAAAAATGGAGAGTTGCCCACAAGACTGAGAGTTCTCCAAAAGATGGTGTAGAAAATCAGGTTCCAACTCGGAAGAAGGGGTGGACGGAAAAGGTAAAATTCAGTTTGAGAAGAACAGAATCTGATCCACCTCCATCAAGGATTCAGAGTGGCAGAAAGGAACCTAAGCCATCAGTTAGGCGCAGTTTGTTAGAAGATCTTTGTAAGGCACTTGGCTCAGATGAAGATACAGAACAGGTGCAGAGTCACAAAGTCCTATGCCAGCAGGATAATCTTTCTGAAACAGTTGAAGTAGAGCGACAAGATAGTGGCTGTAATGGCGACAACAATTACTCATCTGATGATAGATGTCCTAGTGGAAATTCTGGTTTTGAGGAAGACTCGTCTATATCTTCTGACCCTACTAGTCCTCCTAATGAGGCCAATGATCATGAAATTACCTCAGAGAAAAGTAGTGTTGCATCTAATTTATCCCTTGATGAATGCAATGAAACGTCAGACACCAATCCCAACGATTCACCATTTCCGATCACTGATCCTCCTGAGAGAGCACCTCAGAAATCAGGGTGTAATAATGCAGGAAATTTTGAATGCACTGAAACTTCAGATACCAGCCCCAATGATTCACCCCTTCCAACATCTGATCCTCCTGAGAACATAACTCAGACATCAGGATGCAATAATGACAATGATGCAGGAAATTCAGCTACACATCCTAAAGAGAGAAAACAGAATAAATTCCAATGGTTTTGGAAGTTTGGACGGAATACTGTCGAGGCTATATCTGAGAAAGTAGGAGGTGCTACTGAGGCCACAAAATCTGCCAACAGCAATCAAAGTAATACACCACCACCAGTCTCATCTACAGCTAATGGGGATTGCAGTTCTGTTAGTTGCGGAGGAGATTCTGTAGACCAGAATGTGATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATCCAGGTGATTGAATCTGTTTTCCAACAAGACCGGGGCCAGGGAGCCTCATTGGAGAACTTATCTAAAAATGTTCTTGTTGGCAAAGGGCAGGTTACTGCAATGACAGCTCTGAAGGAGCTTCGGAAAATTAGCAATCTTTTGTCTGAGATGTGA 2598 0.4269 MPPALVDPLLASPSSTDAVPRKSAPENRRFGDLRGLQWRINLGVLPSSSSNSIDHLRRVTADSRRRYASLRRRLLVEPHVPKDGANSPNLVMDNPLSQNPDSTWGRFFRNAELERMVDQDLSRLYPEHGSYFQTQGCQGMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLEHLSEVRKLYEDHFTDRFDGLLCQENDLSYSFDFRKSLELEDEIGPNGNAMKANSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMKGGHGSVAMADFFFSSPVAGSHTGLPPVIEASTALFHLLSLVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNSKVENSADDNVDYGFRILHSPRGSFISAMAVAMLLHLRSSLLATENPTTCLQRLLNFPENINIEKLLEKAKSLQTLALSIDISSLSPLFVGFHHQSKVISTRSVSFPSESVSPKTPLNSLPDSYWEEKWRVAHKTESSPKDGVENQVPTRKKGWTEKVKFSLRRTESDPPPSRIQSGRKEPKPSVRRSLLEDLCKALGSDEDTEQVQSHKVLCQQDNLSETVEVERQDSGCNGDNNYSSDDRCPSGNSGFEEDSSISSDPTSPPNEANDHEITSEKSSVASNLSLDECNETSDTNPNDSPFPITDPPERAPQKSGCNNAGNFECTETSDTSPNDSPLPTSDPPENITQTSGCNNDNDAGNSATHPKERKQNKFQWFWKFGRNTVEAISEKVGGATEATKSANSNQSNTPPPVSSTANGDCSSVSCGGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRGQGASLENLSKNVLVGKGQVTAMTALKELRKISNLLSEM. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03822 865 MobiDBLite consensus disorder prediction 761 787 - -
Seca6g03822 865 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 28 436 - -
Seca6g03822 865 MobiDBLite consensus disorder prediction 590 665 - -
Seca6g03822 865 Gene3D - 304 446 - -
Seca6g03822 865 ProSiteProfiles TBC/rab GAP domain profile. 28 365 IPR000195 -
Seca6g03822 865 Pfam Rab-GTPase-TBC domain 264 365 IPR000195 -
Seca6g03822 865 Pfam Rab-GTPase-TBC domain 114 173 IPR000195 -
Seca6g03822 865 SMART tbc_4 20 411 IPR000195 -
Seca6g03822 865 MobiDBLite consensus disorder prediction 501 552 - -
Seca6g03822 865 MobiDBLite consensus disorder prediction 680 726 - -
Seca6g03822 865 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g03822 865 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 301 440 IPR035969 -
Seca6g03822 865 MobiDBLite consensus disorder prediction 501 532 - -
Seca6g03822 865 FunFam TBC1 domain family member 5 304 448 - -
Seca6g03822 865 MobiDBLite consensus disorder prediction 590 735 - -
Seca6g03822 865 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 325 IPR035969 -
Seca6g03822 865 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 104 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03822 Seca-Chr6 105689006 105694456 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03822 K18469 - gmx:100812967 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03822 6 105689006 105694456 Seca6g03822 6 105689006 105694456 ECH
Seca12g00748 12 6834009 6838635 Seca6g03822 6 105689006 105694456 PCT