Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00748 ATGCCGCCAGCTCTGGTGGACCCGCCATTTCCAAAATCATCGTCGGTTCCATCTATAAGCTCCGGCACCGTTTCTCAAGGATCGGCGCCGGAGAGTCGGCGATTTGATGATCTTAGAGGTTTGCAGTGGCGAATAAATCTTGGGGTTTTGCCATCATCTTCTTCTTCTTCAACAACTTTCATTGATGATCTTCGTCGTGCCACCGCTAATTCTAGAAGGAGGTATGCCTGTTTGAGGGGATGCCTCTTGGTGGATCCGCATACACCTAAGGATGGAGGTAGTTCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGCACATGGAGTCGCTTTTTTCGCAACGCCGAGCTGGAGAGGATGGTTGATCAGGATTTATCACGTTTGTACCCAGAACATGGCAACTATTTCCAGACACCAGGATGCCAAGGAATATTGAGACGAATTTTATTACTGTGGTGTCTCAGACACCCAGACTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGTTGCTTTATGTTCTCCAAGTTGATGTTGAGCATCTTTCGGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGGTCTCTTTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTCCAGACCTGATGGAGGATGAAATTGGCTCCCATGGAAATGCAATGACAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAAACGATTGTATTGCTAAGTGACGCTTATGGGGCTGAAGGTGAACTTGGCGTTGTTTTATCTGAGAAATTCATTGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGGCTCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTATTCACCCGTGGCTGGGTCTCATTCTGGTTTGCCTCCTGTAATTGAAGCCTCTGCCGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTCTGCATAGCCATCTTCTTGATCTCGGGGTTGAGCCCCAATACTTTGCTCTCCGCTGGTTGCGAGTTTTGTTTGGACGAGAATTTTCACTTGACAACCTCTTGATCATCTGGGATGAGATCTTTTTAGCTGATAATAGTAAAGTGGAAAAGCATGTTGAGGTTAATACTGATTGTGGTCTTAGGATCTTACATTCATCTCGTGGAGCATTTATCTCTGCTCTGGCTGTAGCCATGTTACTTCATTTAAGATCTTCAGTACTTGCAACTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTTCCTGAGGACACTGACATTAAAAAACTAATAGAGAAGGCTAAATCCTTGCAGGTTCTTGCATTAGGTCCTGATATTTCATCCTCAACACCTTCGTTTATAGAGTATCATAACCAGGGTAAATCAGTTATTAAAAGATCTGCTACCCTTCCATCAGAATCAGCTTCACCAAAAACTCCTCTGAATTTATTAGCTGATAGCTATTGGGAAGAAAAGTGGAGAGTTGTCCACAAGACTGAAGAACTCAAAAAAGATGGAGAAGAAAAACAGGTTCCAAATCGGAAAAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTGAAAAGAGCAGAATCTGTTCCTTCTTCATCAAGGATTAAGAGTGGTAAAAAGGAAGCTAAGGTATCTACTAGGCGCAGTTTGTTAGAAGATCTTTCTAAGGAACTTGGCTCAGAGGAAGATACAGAAAAACTGTGCTGTCATGAAAACTCATGCCAGCATGTAGCAGTTGAAGTGGAGCAACAAGATGACAGGTCTGAAGCCAGCAACAATTACTGTGCTGAAGATAGATCTCTAAATGGAAACATTGGCAGTGAGGAAAACTCACCTGGCCCAGCTAGTCCTCCTAATGAGGCCAATGATTGTGAAAATGACTCAGATAAAAGCAGTGTTGCATCTAATTTATCCCATTATGAAAATAATGAAACTTCACATAGTAGTCCCATTGATTCACCTCTTCCAATATCTGATCATCCTGAGAACATATCTCAGACATCAGGGCGCAATAATGATTCCACAGGAAATTCGGTCACACATTCTAAGGAGAGAAAACTGAGTAGATTACAGTGGCTTTGGAGGTTTGGGCGAAATAATGGTGAGTTGATAACTGAGAAAAGAGGAAGTCCTCCTGAGGCTGTAAAACCTGCCAACAATTGTAATAATCAAAGTAATACAATGCCCTCTTCTACAGCTTGTGCACATTGTAGTTCTGTTAGTTGCAAAGGGGATTCTGCAGACCAGAATATGATGGGAACTTTGAGAAATCTTGGGCAGTCTATGCTTGAGCATATTCAGGTGATTGAGTCTACTTTCCAACAAGACCGGGGCCAGGGAGATTCATTGGATAAAAATGTTCTTGTTGGAAAAGGGCAGGTTACTGCCATGTCAGCTCTCAAGGTGTCAGCTCTCAAGGAGCTGCGCAAAATTAGCAATATTTTGTCTGAGATGTGA 2499 0.4202 MPPALVDPPFPKSSSVPSISSGTVSQGSAPESRRFDDLRGLQWRINLGVLPSSSSSSTTFIDDLRRATANSRRRYACLRGCLLVDPHTPKDGGSSPNLVMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPDCGYRQGMHELLAPLLYVLQVDVEHLSEVRKLYEDHFTDRFDGLFCQENDLSYSFDFRKSPDLMEDEIGSHGNAMTIKSLDELDPKIQTIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDALMNGAHGSVAMADFFSYSPVAGSHSGLPPVIEASAALYHLLSHVDSSLHSHLLDLGVEPQYFALRWLRVLFGREFSLDNLLIIWDEIFLADNSKVEKHVEVNTDCGLRILHSSRGAFISALAVAMLLHLRSSVLATENPTTCLQRLLNFPEDTDIKKLIEKAKSLQVLALGPDISSSTPSFIEYHNQGKSVIKRSATLPSESASPKTPLNLLADSYWEEKWRVVHKTEELKKDGEEKQVPNRKKGWTEKVKFSLKRAESVPSSSRIKSGKKEAKVSTRRSLLEDLSKELGSEEDTEKLCCHENSCQHVAVEVEQQDDRSEASNNYCAEDRSLNGNIGSEENSPGPASPPNEANDCENDSDKSSVASNLSHYENNETSHSSPIDSPLPISDHPENISQTSGRNNDSTGNSVTHSKERKLSRLQWLWRFGRNNGELITEKRGSPPEAVKPANNCNNQSNTMPSSTACAHCSSVSCKGDSADQNMMGTLRNLGQSMLEHIQVIESTFQQDRGQGDSLDKNVLVGKGQVTAMSALKVSALKELRKISNILSEM. 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00748 832 MobiDBLite consensus disorder prediction 611 698 - -
Seca12g00748 832 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 309 449 IPR035969 -
Seca12g00748 832 ProSiteProfiles TBC/rab GAP domain profile. 33 374 IPR000195 -
Seca12g00748 832 MobiDBLite consensus disorder prediction 548 562 - -
Seca12g00748 832 Gene3D - 313 453 - -
Seca12g00748 832 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 105 291 - -
Seca12g00748 832 MobiDBLite consensus disorder prediction 642 692 - -
Seca12g00748 832 MobiDBLite consensus disorder prediction 540 562 - -
Seca12g00748 832 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 36 445 - -
Seca12g00748 832 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 36 334 IPR035969 -
Seca12g00748 832 MobiDBLite consensus disorder prediction 1 33 - -
Seca12g00748 832 FunFam TBC1 domain family member 5 313 457 - -
Seca12g00748 832 Pfam Rab-GTPase-TBC domain 274 375 IPR000195 -
Seca12g00748 832 Pfam Rab-GTPase-TBC domain 122 181 IPR000195 -
Seca12g00748 832 SMART tbc_4 24 404 IPR000195 -
Seca12g00748 832 MobiDBLite consensus disorder prediction 13 30 - -
Seca12g00748 832 MobiDBLite consensus disorder prediction 611 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00748 Seca-Chr12 6834009 6838635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00748 K18469 - gmx:100816501 1212.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00748 12 6834009 6838635 Seca12g00748 12 6834009 6838635 ECH
Seca12g00748 12 6834009 6838635 Seca6g03822 6 105689006 105694456 PCT