Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03817 ATGGGAACGTTTCAGAGCTTCAAAAAGGCCTATGGAGCTCTCAAGGACTCCACCCAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGATTTGGATGTTGCAATCGTAAAGGCTACCAATCACGTGGAATACCCTCCCAAGGAACGTCATGTTCGAAAAGTATTTTATGGGACAGCAGCACATCTACCACGGGCAGATGTGGCATACTGCATTCACAAACTTTCCAAGAGACTTTCCAAGACACGAAGTTGGATAGTTACTATAAAGACATTGATAGTCATTCATAGGACTTTGAGAGAGGGTGATCCTACCTTCAAAGAAGAGCTTATGAACTTCTCACGCGTGGGATATATTTTCCAAATATCCAATTTCAAAGACGACTCAAGCCCTGTAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAGACTTGAATGTTTTAGAGTCCTTAAATATGACATCGAATCTGAGCGTTTAGCAAAACCATCACCGGCTGCAACTAAAACACATACTAGAACTCGATCATTGGCTGGTGATGATCTATTGGAGCAGCTACCTGCACTGCAGCAACTTCTATACCGGCTTATTGGTTGCCAGCCTGAAGGGTATGCTTACAGCAATTGTCTAATACAGTATGCATTGGCCTTGGTATTGAAAGATAGCTTCAAAATATATTGTGCAGTGAATGATGGAATCATCAATCTAGTGGACAAGTTCTTTGATATGCCAATACATGATGCAGTGAAGGCTTTGAATATTTATAAAAGAGCTGGTCAACAGGCTGAAAGTCTTGCTGACTTTTATGAATACTGCAAAGGCTTGGACATTGCTAGGAATTTCCAATTTCCAACGCTGAGACAGCCACCTCCCTCTTTCCTTGCCACAATGGAAGAATACATTAAAGAAGCACCCCAAACAGACTCTGATCGTAAGGGACTGGTAAGAAAAAGTGATGTTCAGGACTATCAAGAAAAAGATCAATCACCCAAAGAAGAATCAGAACCTAGCGAACCTGAAGATACTCAAGAAAATGAGAAACAATATGAGAAAGTTAATGACAAAGAACCAGTAAAAGAGGAGGAAACACAACCTAAGGAGGAGGAGGTTAAGGAGCATCCTCCTCTGATAGCAATTGATGCTACTGATGATTTGCTGGGTCTGAATGATACAAATCCAAAAGCAGTTGAAGTGGAGGAAAGCAATGCTATGGCACTTGCAATTGTACCACCTGGTGTAGGAAATAATGCAACCAACCTTGCAATGAGTAACAATGGTGAGACTACTGGTTGGGAACTTGGACTGGTTACAACACAAAGTAACCATACAAATCAAGCACCAGATCGCAAAATGGCTGGTGGTTTTGACAAGCTATTGCTGGACAGTTTGTATGAAGATGAAAATTCCAGGAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGGGGAGTGGCCATACAGAACCCATTTGATAATTATAATCAACATGATCCATTTGCATTGTCCAACAATATAGCACCTCCACCCAACGTGCAGCAACAAATGTTGTTCCAACAGCAGCAACAGCAGCAAATGATGTTCCAACAGCAGCAACAGCAGCAAATGATGTTCCAACCCCAACAAAATCATATGATGATGGTCCCTTACCAGCAACAATATACCCAATACCCTCAACAGATGCAGACTATGGGTTCTCCTCATAATCCTTTTGGAGACCCCTTACCCGCACCTAGCTACTCTAACAATTCCATGCCCCAACAAGGAAATTACAATTTAATGTAG 1803 0.4187 MGTFQSFKKAYGALKDSTQVGLAKVNSEYKDLDVAIVKATNHVEYPPKERHVRKVFYGTAAHLPRADVAYCIHKLSKRLSKTRSWIVTIKTLIVIHRTLREGDPTFKEELMNFSRVGYIFQISNFKDDSSPVAWDCSAWVRTYALFLEERLECFRVLKYDIESERLAKPSPAATKTHTRTRSLAGDDLLEQLPALQQLLYRLIGCQPEGYAYSNCLIQYALALVLKDSFKIYCAVNDGIINLVDKFFDMPIHDAVKALNIYKRAGQQAESLADFYEYCKGLDIARNFQFPTLRQPPPSFLATMEEYIKEAPQTDSDRKGLVRKSDVQDYQEKDQSPKEESEPSEPEDTQENEKQYEKVNDKEPVKEEETQPKEEEVKEHPPLIAIDATDDLLGLNDTNPKAVEVEESNAMALAIVPPGVGNNATNLAMSNNGETTGWELGLVTTQSNHTNQAPDRKMAGGFDKLLLDSLYEDENSRRQLQLQNAGYGHGGVAIQNPFDNYNQHDPFALSNNIAPPPNVQQQMLFQQQQQQQMMFQQQQQQQMMFQPQQNHMMMVPYQQQYTQYPQQMQTMGSPHNPFGDPLPAPSYSNNSMPQQGNYNLM. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03817 600 SMART enth_2 30 161 IPR013809 -
Seca6g03817 600 SUPERFAMILY ENTH/VHS domain 30 162 IPR008942 -
Seca6g03817 600 MobiDBLite consensus disorder prediction 570 600 - -
Seca6g03817 600 FunFam Putative clathrin assembly protein 173 320 - -
Seca6g03817 600 MobiDBLite consensus disorder prediction 582 600 - -
Seca6g03817 600 MobiDBLite consensus disorder prediction 310 379 - -
Seca6g03817 600 Gene3D - 5 161 IPR008942 -
Seca6g03817 600 Gene3D ANTH domain 174 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Seca6g03817 600 FunFam Clathrin assembly protein AP180 6 161 - -
Seca6g03817 600 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Seca6g03817 600 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 533 IPR045192 GO:0048268|GO:0072583
Seca6g03817 600 SUPERFAMILY GAT-like domain 178 309 - -
Seca6g03817 600 CDD ANTH_N 32 154 - -
Seca6g03817 600 Pfam ANTH domain 31 309 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03817 Seca-Chr6 105659295 105664089 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03817 K20044 - gmx:100786060 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03817 6 105659295 105664089 Seca6g03817 6 105659295 105664089 ECH
Seca12g00747 12 6827577 6832586 Seca6g03817 6 105659295 105664089 PCT