Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00747 ATGGGAACGTTTGAGACCTTCAGAAAAGCCTATGGAGCTCTCAAGGATTCCACCAAGGTTGGCCTAGCCAAGGTCAATAGCGAATATAAGGAATTGGACATTGCAATTGTAAAAGCTACCAGTCACGTAGAATATCCTCCTAAGGAACGTCATGTTCGAAAAATATTCTATGCCACATCAGCACACCAACCACGAGCAGATGTGGCTTACTGCATACATGCACTTTCCAAGAGACTTTCCAAGACGCGAAATTGGATAGTTGCCATAAAGACATTGATAGTGATTCATAGGATATTGAGAGAGGGTGATCCTACCTTCAGAGAAGATCTTCTAAACTACTCACGCAGGGGACATTTTCTACAAATATCCAATTTCAAAGATGACTCAAGCCCTCTAGCTTGGGATTGTTCTGCATGGGTTCGAACCTATGCACATTTTTTAGAAGAAAGACTTGAGTGCTTTAGAGTTCTTAGATATGACATAGAGTCTGAGCGTTTAACAAAATCATCACCGGCTTCAAGTAAGGCACATAGCAGAACAAGGATGTTGACTAGTGAAGAGCTGTTGGAGCAGCTACCTGCACTACAACAACTTCTTTACCGACTTATCTGTTGTCAGCCCGAAGGATTAGCTTTCAGCAATTATCTAATACAGTATGCATTGGCCCTGATGTTGAAAGAGAGCTTCAAAATATATTGTGCCCTCAATGATGGAATCATAAATCTTGTGGATGTGTTCTTTGAGATGCAAAGATATGATGCAATAAAGGCTTTACACGTTTATAAAAGAGCTGGCCAACAGGCTGAAAATCTTGGTGACTTCTATGAATACTGCAAGGGCTTGGACCTTGCTAGGAGTTTTCAATTTCCAACCTTGAGACAGCCACCATCCTCTTTTGTTGCCACAATGGAAGAATACATTAAAGAAGCACCCACGGCAGGCTCTATTCAGAAAAAACTGGAGGATGAGGAAAACGATCAATCACCTCAAAAAGAAGAACCAGAAAGCAAAGAATCTGAAGAGCCTCAAGAAGTTGAGAAAGAAGCTGAAGAGGTCAATGAGGAAGAACTCAATGAGGAAGAACCCGTGGATAAGGATGAAACACAACCTAAGGAAGAGGAGGCTGAACCTCCTCCTTTGATATCAACTGATGATTTGCTGGGTCTAAGTGAAATAAATCCAAAAGCACAAGAATTGGAGGAATGTAATGCTCTGGCGCTTGCAATTATACCACCTGGTGTAGGAAATAACTCTAATAATCTTGCTTTGACTGATATAAGTGGAACTTCTGGTTGGGAACTTGCACTGGTTACAACACCAAGTAACCACACTAGCCAAGCACCTGATCGAAAAATGGCTGGTGGGTTTGACAAGCTGTTACTAGACAGTTTGTATGAAGATGAAAATTCTAGGAGACAGCTTCAACTTCGAAATGCAGGTTATGGATATGAGGGAATGGCTATGCACCAAAATCCATTTGATAATTATAACAATCAACATGATCCATTTGCAATGTCCAACAACTTTGCACCTCCAGCGAATGTGCAAATGGCATTAATGGCTCAGCAACATCAACAACAACAAATGATGTTCCAACAACAAATGATGTACCAACAACAGCCACAACACAACATGATGATGGTTCATTACCAATATCCACAAACTCAATACCCTCAACAAATGCCAGCAATGAATTCTTCTAATCCATTTGGAGATCCCTTACCTGTACCTAGCTATTCTTATAGTTCCATGCACCATCAAGGGAACCACAATTTAATGTAG 1782 0.4091 MGTFETFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHALSKRLSKTRNWIVAIKTLIVIHRILREGDPTFREDLLNYSRRGHFLQISNFKDDSSPLAWDCSAWVRTYAHFLEERLECFRVLRYDIESERLTKSSPASSKAHSRTRMLTSEELLEQLPALQQLLYRLICCQPEGLAFSNYLIQYALALMLKESFKIYCALNDGIINLVDVFFEMQRYDAIKALHVYKRAGQQAENLGDFYEYCKGLDLARSFQFPTLRQPPSSFVATMEEYIKEAPTAGSIQKKLEDEENDQSPQKEEPESKESEEPQEVEKEAEEVNEEELNEEEPVDKDETQPKEEEAEPPPLISTDDLLGLSEINPKAQELEECNALALAIIPPGVGNNSNNLALTDISGTSGWELALVTTPSNHTSQAPDRKMAGGFDKLLLDSLYEDENSRRQLQLRNAGYGYEGMAMHQNPFDNYNNQHDPFAMSNNFAPPANVQMALMAQQHQQQQMMFQQQMMYQQQPQHNMMMVHYQYPQTQYPQQMPAMNSSNPFGDPLPVPSYSYSSMHHQGNHNLM. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00747 593 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Seca12g00747 593 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Seca12g00747 593 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 529 IPR045192 GO:0048268|GO:0072583
Seca12g00747 593 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Seca12g00747 593 MobiDBLite consensus disorder prediction 311 386 - -
Seca12g00747 593 MobiDBLite consensus disorder prediction 344 363 - -
Seca12g00747 593 SMART enth_2 30 161 IPR013809 -
Seca12g00747 593 MobiDBLite consensus disorder prediction 364 378 - -
Seca12g00747 593 MobiDBLite consensus disorder prediction 315 343 - -
Seca12g00747 593 Gene3D - 6 161 IPR008942 -
Seca12g00747 593 FunFam Putative clathrin assembly protein 173 321 - -
Seca12g00747 593 SUPERFAMILY GAT-like domain 178 309 - -
Seca12g00747 593 FunFam Clathrin assembly protein AP180 6 161 - -
Seca12g00747 593 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Seca12g00747 593 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00747 Seca-Chr12 6827577 6832586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00747 K20044 - gmx:100818165 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00747 12 6827577 6832586 Seca12g00747 12 6827577 6832586 ECH
Seca12g00747 12 6827577 6832586 Seca6g03817 6 105659295 105664089 PCT