Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03813 ATGGCCACCGCTGAACCGACCCAAAACGGCACCGCCACTGCCTCAAAGCCACTCCCACCTGACAACTCCTCCACCGCCCAACCACCGACCGCCGAGGCAACTGCCACTAACGCCACCCCGGCGGCCAACCCATCGACTCAGGAGCCCGAGATGGAACCTGACACCGCCATTACTCCTCTGGAAAAGAGATGGCCAGGTTGGCCCGGGGACTGCGTGTTCCGCCTCATCGTGCCAGTCGGTAAGGTGGGCAGCATCATCGGCCGCAAGGGAGAGCTCATCAAGAAGATGTGCGAAGAGACTCGAGCTCGTATTCGCGTTCTTGACGGTGCTGTTGGCACTCCTGATCGAATTGTTCTCATATCTGGGAAGGAAGAGCCAGAGGCGGCTCTTTCCCCTGCAATGGAAGCAGTGATAAGGGTATTCAAGCGTGTCTCTGGATTATCCGAAACTGATGGTGAGATTAAAGAATCTGCTGGGGCTACATTTTGTTCCATCCGTTTATTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGCTCGCTAATCAGATCCATACAGGAGAATACTGGTGCTTCTGTTCGAGTACTGTCAGGAGATGAGGTGCAACTTTATGCTACTGCGGATGAGAGGATTGTGGAAATGCAGGGTGAAGCCTTGAAAGTCCTTAAAGCTCTGGAAGCAGTGGTTGGCCATCTGAGGAAGTTTTTGGTTGATCACAGTGTTCTTCCGCTATTTGAGAAAACTTGCAATGCGCCTGTCCCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTGCTGCATACTACTTCACAAACTAGCATATTTGCTGATATTCCTCTTTCAACAAAAAGGGATTCTGTCTTTGCTGACCGTGAAAGTCAATTGGACTCATTACTTCCTTCCTCCACTATGTCTCTCTATGGGCAAGATTCTTCACATTCGAGTGTTCGTTCTTCAGCCCTTAGTCGTGTTGGTGCTCCTATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAGGACATCATTGGTATTCAAGGGGCTAATATTGATTACATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATTATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAATTGGCACAACAATTGATTCAGGAAGTTATAAGCAATCACAAAGAACCTGTCACTAGCAGTTATGGAAGGTTAGATGCAGGTCTGAGGCCTTCATACTCTCAGTTGGGCACTACATCACGCTTGTCATCTTCATTACCCTCACAAACATATACAGGTTATGGAGCATCTGGTTTAGGAGACTACAGTACTTTCAGACTTTAA 1380 0.4841 MATAEPTQNGTATASKPLPPDNSSTAQPPTAEATATNATPAANPSTQEPEMEPDTAITPLEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAALSPAMEAVIRVFKRVSGLSETDGEIKESAGATFCSIRLLVASTQAINLIGKQGSLIRSIQENTGASVRVLSGDEVQLYATADERIVEMQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTCNAPVPQDRQAETWSDKSLLHTTSQTSIFADIPLSTKRDSVFADRESQLDSLLPSSTMSLYGQDSSHSSVRSSALSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGANIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQLAQQLIQEVISNHKEPVTSSYGRLDAGLRPSYSQLGTTSRLSSSLPSQTYTGYGASGLGDYSTFRL. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03813 459 ProSiteProfiles Type-1 KH domain profile. 70 137 - -
Seca6g03813 459 MobiDBLite consensus disorder prediction 1 52 - -
Seca6g03813 459 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 63 125 IPR036612 GO:0003723
Seca6g03813 459 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 242 IPR036612 GO:0003723
Seca6g03813 459 Gene3D K Homology domain, type 1 334 409 IPR036612 GO:0003723
Seca6g03813 459 CDD KH-I_PEPPER_rpt2_like 166 236 - -
Seca6g03813 459 CDD KH-I_PEPPER_rpt1_like 70 138 - -
Seca6g03813 459 Gene3D - 70 239 - -
Seca6g03813 459 MobiDBLite consensus disorder prediction 1 53 - -
Seca6g03813 459 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 56 413 - -
Seca6g03813 459 SMART kh_6 161 236 IPR004087 GO:0003676
Seca6g03813 459 SMART kh_6 69 142 IPR004087 GO:0003676
Seca6g03813 459 SMART kh_6 335 404 IPR004087 GO:0003676
Seca6g03813 459 Pfam KH domain 73 126 IPR004088 GO:0003723
Seca6g03813 459 Pfam KH domain 339 401 IPR004088 GO:0003723
Seca6g03813 459 Pfam KH domain 165 231 IPR004088 GO:0003723
Seca6g03813 459 ProSiteProfiles Type-1 KH domain profile. 162 231 - -
Seca6g03813 459 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 332 405 IPR036612 GO:0003723
Seca6g03813 459 ProSiteProfiles Type-1 KH domain profile. 336 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03813 Seca-Chr6 105614854 105624600 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03813 K21444 - gmx:100815466 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03813 6 105614854 105624600 Seca6g03813 6 105614854 105624600 ECH
Seca12g00742 12 6788972 6793765 Seca6g03813 6 105614854 105624600 PCT