Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00742 ATGGCCACAGCGGAGCCAACTCCGAACGGCACAGGCTCCTCACAGCCACTGGCTGAGGCAACTGCCGTCGAGGAACCCGAAACCACCGAGAAGAGATGGCCTGGATGGCCTGGTCACTGCGTTTTCCGGCTGATCGTGCCCGTCCTCAAGGTTGGCGGCATAATCGGCCGCAAGGGGGAACTCATCAAGAAAACCTGTGAAGAGACTCGAGCTCGAATTCGCGTTCTCGATGCTCCCCTCGGCACTCCTGATCGAATCGTACTCGTCTCGGGGAAGGAAGAGCCTGAGGCACCTTTTTCTCCTGCAATGGATGCTGTAATAAGGGTTTTCAAACGTGTCTCAGGATTATCTGAAACTGATGGTGAGAATAAAACATCAGGAGCTGTGGGGGCTGCATTTTGTTCCATCCGTTTATTGGTAGCCTCAACGCAGGCTATCAATTTGATTGGAAAGCAGGGGTCATTAATTAAATCTATACAGGAAAGTACTGGTGCTTCTGTTAGAGTATTGTCTGGAGATGAGCTCCCATTTTATGCTGGTGCTGATGAGAGGATTGTGGAACTACAAGGAGAAAACTTCAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGGCACTTGAGGAAGTTTTTGGTTGATCACAGTGTTCTTCCCCTATTTGAGAAAACTTGCAATGTGACAGTCTCCCAAGACCGCCAGGCAGATGCCTGGGCTGACAAACCATCACTGCATAGTGCTTCACAGCCTAGCATTGTTTCTGATATTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCATTTAGATTCATTGCTCCCGTCCTCCACTATGTCATTATATGGGCAAGATTCTTCACTCTCTGGTCTTCGTTCTTCGGCTCTTGGTCGTGCTGCTCCTCCTCCTATTGTTACTACGGTTATCCAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATACAAGGGACTAATATTGATTACATTCGTCGTACTAGTGGAGCCATATTGACCGTGCAGGAGAGCAGAGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACAGCACAACAATTGATTCAGGAAGTCATAAGCAATCACAAAGAACCTGTTGCTAGTAGTTACAGCAGGTTAGATGCGGGTCTGAGGTCGTCTTACCCTCAATTGGGCAGTTCATCGTATTCCTCATCTTCCTTGTCCTCACAACCCTACAGTGGCTATGGATCTTCTGGTCTAGGAGGCTCAGGATATAGTACTTTCAGACTTTAA 1302 0.4747 MATAEPTPNGTGSSQPLAEATAVEEPETTEKRWPGWPGHCVFRLIVPVLKVGGIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLVSGKEEPEAPFSPAMDAVIRVFKRVSGLSETDGENKTSGAVGAAFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDELPFYAGADERIVELQGENFKVLKALEAVVGHLRKFLVDHSVLPLFEKTCNVTVSQDRQADAWADKPSLHSASQPSIVSDIPLSTKRDSLFADRESHLDSLLPSSTMSLYGQDSSLSGLRSSALGRAAPPPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASSYSRLDAGLRSSYPQLGSSSYSSSSLSSQPYSGYGSSGLGGSGYSTFRL. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00742 433 CDD KH-I_PEPPER_rpt2_like 137 207 - -
Seca12g00742 433 ProSiteProfiles Type-1 KH domain profile. 39 106 - -
Seca12g00742 433 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 28 401 - -
Seca12g00742 433 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g00742 433 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 132 214 IPR036612 GO:0003723
Seca12g00742 433 ProSiteProfiles Type-1 KH domain profile. 308 371 - -
Seca12g00742 433 Gene3D - 39 210 - -
Seca12g00742 433 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 304 377 IPR036612 GO:0003723
Seca12g00742 433 CDD KH-I_PEPPER_rpt1_like 39 107 - -
Seca12g00742 433 Gene3D K Homology domain, type 1 306 381 IPR036612 GO:0003723
Seca12g00742 433 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 32 94 IPR036612 GO:0003723
Seca12g00742 433 MobiDBLite consensus disorder prediction 1 18 - -
Seca12g00742 433 SMART kh_6 307 376 IPR004087 GO:0003676
Seca12g00742 433 SMART kh_6 132 207 IPR004087 GO:0003676
Seca12g00742 433 SMART kh_6 38 114 IPR004087 GO:0003676
Seca12g00742 433 Pfam KH domain 311 373 IPR004088 GO:0003723
Seca12g00742 433 Pfam KH domain 42 94 IPR004088 GO:0003723
Seca12g00742 433 Pfam KH domain 136 202 IPR004088 GO:0003723
Seca12g00742 433 ProSiteProfiles Type-1 KH domain profile. 133 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00742 Seca-Chr12 6788972 6793765 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00742 K21444 - gmx:100802089 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00742 12 6788972 6793765 Seca12g00742 12 6788972 6793765 ECH
Seca12g00742 12 6788972 6793765 Seca6g03813 6 105614854 105624600 PCT