Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03804 ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCAGAGGCTGCTTCAATTTTGAAGCACTCTCTGGGTTTGGCACGCAGGAGGGGCCATGCACAGGTTACCCCTCTGCATGTTGCTGCTACTTTGTTGAGTTTAAGAGCCAGTTCTTTGAGAAGGGCTTGTCTCAAATCTCAGCCACACCAAACTTCACATCCTCTTCAATGCAGAGCTCTTGAACTCTGCTTCAATGTTGCTCTTAATAGGCTTCCAACTACACCTGGTCCTTTGCTCCACACTCAGCCTTCACTTTCCAATGCTCTCATTGCTGCACTTAAAAGAGCACAAGCTCACCAGAGAAGGGGATGCATTGAGCAACAGCAACAACAACCACTTCTCACCATCAAGGTTGAGCTTGAACAACTCATTATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCTAGCACTGCTGTTAAGAACAACATAGAGGACTCTTCACCTCCTTCTGTTTTTCAGTGTTACAATAGTTCAGGTGGTGTTTTCTCTTCTCCTTGTTCTCCTTCTCCTAGCGAGAACCAGAGAGAGAGTATTAATCCTAGCCCCTTCAGGCAAAACCATTTCTTGGCTGCTTTTACTTCTTCTGATCAGTATAGTCCATTTCTCTTTTCTCCACAGAAGAAAGCCTCAGTGTATCCCATCACTACTGAGTCATCACACTCTTCCAAGGAAGACATCAAGCTAGTTCTGGATGTCTTCTTGAGGAAGAAGAAAAAGAACACTGTGATAGTTGGTGACTCAGTATCATTAACTGAAGGGCTTGTGGGAGAGTTAATGGGAAGGTTAGAAAGAGGTGAGGTACCTGATGAGTTGAAGTCAACTCATTTCATCAAGTTTCAGTTTGCACCAGTGTCTTTGAGGTTCATGAAAAAGGATGAAGTGGAAATGAACCTCTCAGCACTGAAAAGGAAAGTGGATTCTATTGCATCAGGAGGTGGAGGAGGAGGAGCTATTTTCTATGTTGGAGACCTGAAGTGGACAGTGGAGGGAAGTTTCAGTGAAAAAGAAGGTGGGGAAGTTTCTGGTTGTTATAATTATAACCCAGTTGATCATTTAGTTGCAGAAATAGCAAAGTTGTTTTCTGAGCAAGGAAACTCCAACACTAAGGTGTGGCTTGTGGCAACAGCAAGTTATCAAACTTACATGAGGTGTCAAATGAGGCAACCACCTCTTGAGACTCAGTGGGGTCTTCAGGTTGTTCCTGTTCCATCTGGTGGACTTGGATTGAGTCTCCATGCTTCAAGTGTCCATGATTCAAAGATGGCCATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCTCTTTATTAACAAGGAGGAGCAGGATAAGCTCAATTGCTGTGAGGAATGTGCCTCTAATTATGAAAAAGAAGCTCAATTATTCAAACCAGGCCAGAAGAAACTGTTGCCTTCTTGGCTTCAGTCTCATAGCACTGAAGCCAATCAGAAGGATGAATTAACCCAGTTGAAGAAAAAATGGAACAGACTATGCCATTGTCTCCACCAGAACAAACAGCCTCAAAACAATTGGAACAACAGTTTATATAGCAATCAGAGTTCAAATGGCAAGATCTACCCTTATAATTCATCATACCCCTGGTGGCCAAACCAAGGTAGTGTCTTCCCAGATTCAAGTTCTATATCTTTTGCTGCTGATTCTGTTGCAAAACCAGCTTATAGTTCCAACCTTGTACCTCGGTTCCGGCGCCAACAATCATGCACCATTGAGTTCAATTTCAGCGATGTAACTCAGAAAAAGCAATCAACCTTGGATTCTCTTAAGGGCATGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGAAATTCAACATTCGGTGGTTCAGGGCAAACGGTGGAAAATATAACTGATACAACACTGCGACGAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAAACTGTTGCTTCAATAGCAGAGGCCTTGGTTGATTCCAAATCAGCAAAGCAAGGTGCTACTACTTGGTTTCTTTTGCAGGGCAATGACTCTATTGGGAAAACAAGGTTGGCACGTGCCATTGCAGAATCAGTATTTGGCTCAGTTGATATGCTCCTTCACTTGGACATGCTGAAAAGGGAGAATTCAGAAACCCCATTTTCTGAAATGCTTGTTGGAGCATTGAGAAAAAATGAACAACTTGTCGTTTTGATAGAAAATGTTGACTTTGCTGATGCCCAGTTTAAGAAATTCCTTGCAGATGGATTTGAGACAGGAAAGTTTGGAACTTTAAGTAGGAAAGAGGAGAATTCAGGCCAAGCAATATTCATATTAACCAATGGTGGCACTAAAGTCAATGAAGATCAGAACAAGGACTCAGTTGTCAGGTTGGTGTTGCAGATCAGTGAAACCAAGCCTACTTTAGACTCATCATCACCTTGTTTGGGTCATAAGAGAAGGGCTGAACTTGATTTGTTTACCAAGATCAAGAATCCAAGGATTGAAGAGAAGGAAGAGGCTGTGTTGGTTTCTGAACAAAGGAACATAAAGAAAGATTTTTCAAGACAATCAAGCTTTAACAGTACTCTTGACCTGAACATGAAAGCTGATGAAGAGGATGATGGGGAAGAAGAGGACAAAACTGGGGAAAATAGTCCCATTTCAAGTGATTTGACAGGAGAAGCTATAGCAGATCCACTGAACTCAAATGGGTCACTTGACTCAATTGAGAACAGGTTTGAGTTGAATCAAAGTCCAACAAGGAAGAGGGAGATGGCAGAGCTGTTTTTGTCAAGGATAAAAGAGACTTTTGAGGAGGTTTGTGGCAAGAAATATCTGGTGAATTTTACTGTAGAAGAGAGGGTGATAGAGGAAATTTGTGTTGGGTGTGGTTCTTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGAAGGAGGGTATAGTTTTTACACTTTGTTGGGGTGGTAAAGGAGATACAAAATCGGATAATAGTGGGTTCATGAGTTCATGTTTACCCAAGAATATCCAAGTTAACTACTTCATGGATTGA 3129 0.4206 MRSGACTLQQTLTAEAASILKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSPPSVFQCYNSSGGVFSSPCSPSPSENQRESINPSPFRQNHFLAAFTSSDQYSPFLFSPQKKASVYPITTESSHSSKEDIKLVLDVFLRKKKKNTVIVGDSVSLTEGLVGELMGRLERGEVPDELKSTHFIKFQFAPVSLRFMKKDEVEMNLSALKRKVDSIASGGGGGGAIFYVGDLKWTVEGSFSEKEGGEVSGCYNYNPVDHLVAEIAKLFSEQGNSNTKVWLVATASYQTYMRCQMRQPPLETQWGLQVVPVPSGGLGLSLHASSVHDSKMAISQNPSHMLETKLFINKEEQDKLNCCEECASNYEKEAQLFKPGQKKLLPSWLQSHSTEANQKDELTQLKKKWNRLCHCLHQNKQPQNNWNNSLYSNQSSNGKIYPYNSSYPWWPNQGSVFPDSSSISFAADSVAKPAYSSNLVPRFRRQQSCTIEFNFSDVTQKKQSTLDSLKGMEGKEVKITLALGNSTFGGSGQTVENITDTTLRRAHICKLLQENVPWQSETVASIAEALVDSKSAKQGATTWFLLQGNDSIGKTRLARAIAESVFGSVDMLLHLDMLKRENSETPFSEMLVGALRKNEQLVVLIENVDFADAQFKKFLADGFETGKFGTLSRKEENSGQAIFILTNGGTKVNEDQNKDSVVRLVLQISETKPTLDSSSPCLGHKRRAELDLFTKIKNPRIEEKEEAVLVSEQRNIKKDFSRQSSFNSTLDLNMKADEEDDGEEEDKTGENSPISSDLTGEAIADPLNSNGSLDSIENRFELNQSPTRKREMAELFLSRIKETFEEVCGKKYLVNFTVEERVIEEICVGCGSFTNSMFEKWLKDIFQSSLQTVNFGGKEGIVFTLCWGGKGDTKSDNSGFMSSCLPKNIQVNYFMD. 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03804 1042 Coils Coil 459 479 - -
Seca6g03804 1042 Gene3D - 637 866 IPR027417 -
Seca6g03804 1042 MobiDBLite consensus disorder prediction 898 917 - -
Seca6g03804 1042 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Seca6g03804 1042 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Seca6g03804 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 793 IPR027417 -
Seca6g03804 1042 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Seca6g03804 1042 MobiDBLite consensus disorder prediction 874 917 - -
Seca6g03804 1042 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1008 - -
Seca6g03804 1042 FunFam protein SUPPRESSOR OF MAX2 1 9 169 - -
Seca6g03804 1042 Gene3D - 9 168 IPR036628 -
Seca6g03804 1042 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03804 Seca-Chr6 105492826 105496967 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03804 - - gmx:102660146 1543.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03804 6 105492826 105496967 Seca6g03804 6 105492826 105496967 ECH
Seca12g00735 12 6722612 6726398 Seca6g03804 6 105492826 105496967 PCT