Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00735 ATGCGCTCAGGAGGTTGTACATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCATTCTCTTGGGTTGGCTAGGAGGAGGGGCCATGCACAGGTCACTCCTCTCCATGTTGCTGCCACTTTGCTTTCCTTAAGAGCCACTTCTTCCTTCAGAAGGGCTTGTCTTAAATCTCAGCCTCATCCAACTTCACATCCTCTTCAATGCAGAGCTCTTGAACTCTGCTTCAATGTTGCTCTCAACAGACTCCCTACTACACCTTCTCCTTTGATCCACTCTCAGCCTTCTCTTTCCAATGCTCTCATTGCTGCATTGAAAAGAGCACAGGCTCACCAAAGAAGAGGATGCATAGAGCAGCAACAACAACAACCCCTTCTCACTGTTAAGGTTGAGCTTGAACAGCTCATCATTTCCATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGATTCTCTAGCACTCTTGTTAAGAACAATTTAGAGGACTCTTCTGTTTTTCAGTGTTACAATACTACTTCTGGTGGTGTGTTTTCCTCTCCTTGTTCACCTTCTACTAGTGAGAATCACAGGGAAACCATCAACCCTGGAAGTTTGAGGCAGTCACATAATTTCTTGGCTTCTTACACTTCTGAGTTCAACCCTGCTCTCTTTTCTCCACCAAAGAAAGCCTCAGCCTCAGTGTTTCCCATCACTGGTGCAGCTTCTGATGATATCAAGGTTGTTATGGATATCCTCTTGAGGAAGAAGAAAAAGAACACTGTGATAGTTGGTGACTCAGTGTCATTAACTGAAGGCCTTGTGGGAGAGCTAATGGGGAGGTTAGAAAGATCAGAGGTACCTGATGAGTTGAAGTCAACTCATTTTATCAAGTTTCAATTTGCACCAGTTTCATTGAGGTATATGAAAAGAGATGAGGTTGAAATGATACTCTTGGAACTGAAAAGGAAGGTGGATTCCATTGCATCAGGAGGTGGGGGTGGCATTTTTTATATTGGAGACTTGAAATGGACAGTGGAAGCATCTTTCAGTGAAAAGGAAGAAAGGTCCCAAGATGGAGATGTTTCTGGTTACAACCCAGTTGATCATCTAGTTTCAGAAATAGGGAAGTTGTTCTGTGACTGTGGAACCTCAAATGCTAAGGTGTGGTTGATGGCTACTGCTAGTTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGATGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTTCTAGTGTCCTTGATTCAAAGATGACCATCTCCCAGAACTTATCTGATATGCTGGAAACAAAGCCCTTTAGTAACAAGGAGCAGGAGGATAAGCTCAATTGCTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCTCAATTTCTCAAACCAAGCCAGAAGAAAATATTGCCTTTCTGGCTTCAATCACATAGTGATAGCACAGAAGGTCATAATAAGGATGAATTAACACAATTGAAAAGAAAATGGAATAGACTATGCCACTGTCTCCACCAAAGCAAACAGCCTCAGAAACACTTGAACTGGAGCAACAGTTACACTTCAAACACAAAGATATATCCCTATACTTCATCAAGTTCCATATCCTTTGCCAACAATGCCACTAAACCCACTCATAGCTCCAACCTTGTACCTCGATTCCGGCGTCAACAATCATGCACCATTGAGTTCAATTTCAACGATAAAAGGCAAGCAACAGAGCCAGTCTTTGATTCTCTTGAAAGCATGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGGAATGGTGGTTCAGGTGAAACGGTGGAAAATATAACTGATAAAACACTGCAAAGAGCTCATGTTTGTAAACTATTGCAGGAGAATGTGCCATGGCAATCTGAGATTGTTCCTTCCATAGCAGAAGCCTTGATTGATTCCAAATCAGCAAAACAAAGTAACATTACATGGTTATTTATGCAAGGCAATGACTCCATTGGAAAAAGAAGGTTAGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAGCTAATTTTCTCCTTCACTTGGACATGCTAAAGAAAGCCCCATTCTCTGAAATTCTAGCAGGAGCACTGAAAACCCATCAACAGCTTGTGGTTTTAATAGAAAGTGTTGATTTTGCTGATACCCAATTCAAGAAATTCCTCTCAGATGGATTTGAAACAAAAAAGTTTGGAAATTCAAGTAGCACAGAGGAGAAGTCAGGCCAAGTAATATTCATATTAACAAATGGTGGATCCAAAAGCATTGAAGAGCAAAATCAGGACTCAGTTATCAGGTTGTTGTGCCAGATCAGTGAAACCAAGCCTAACTTAGAGACACCTTGTTTGGGCCATAAGCGCAGAGCTGAACTAGATTTGTTTTCCAATATCAAGAGCCCCAGAATTGAAGAGAAAGAAGAGACATTGTTGGTTTCTAAGCAAGGGACTATAAAAAAAGACTTTTCAAGACAATCAAGCTTTAACACTCTTGATCTGAACATGAAAGCTGATGAAGAGGATGAAGCAGGGGAAAGTAGCCCCATTTCAAGCGATTTGACTAGAGAAACTATAATTGATTCCTTAAACTCAAATGGGTTTCTTGAATCAATTGAGAACCGGTTTGAGTTCAACACAAGTCTAGCTAGGGACAGGGAGATGGCAGAGTTGTTTCTATCCAAAATCAAAGGGTCTTTTGTGGAGGTTAGTGGGAAACAATGTATGGTGAATTTTAGTGTAGATGAGAGGGTGATAGAGGAATTGTGTGTGGGGTGTGGTTCTTTTACTAACAGCTTGTTTAAGAAATGGCTGAAAGACATTTTTCAAAGCAGCTTAGAAACAGTTAACTTTGGAGGGAAGGGGGGTATACTTTTTAGACTTTGTTGGGGTGGTAAAGGAGATACAAAATCAGATAGTGGGTTCATGGGTTCTTCTCTGCCCAGGAGTATCCAAGTTAATTACTTCATAGAGTGA 3018 0.4165 MRSGGCTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRATSSFRRACLKSQPHPTSHPLQCRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTVKVELEQLIISILDDPSVSRVMREAGFSSTLVKNNLEDSSVFQCYNTTSGGVFSSPCSPSTSENHRETINPGSLRQSHNFLASYTSEFNPALFSPPKKASASVFPITGAASDDIKVVMDILLRKKKKNTVIVGDSVSLTEGLVGELMGRLERSEVPDELKSTHFIKFQFAPVSLRYMKRDEVEMILLELKRKVDSIASGGGGGIFYIGDLKWTVEASFSEKEERSQDGDVSGYNPVDHLVSEIGKLFCDCGTSNAKVWLMATASYQTYMRCQMRQPPLEMQWALQAVPVPSGGLGLSLHASSVLDSKMTISQNLSDMLETKPFSNKEQEDKLNCCEECASNYEKEAQFLKPSQKKILPFWLQSHSDSTEGHNKDELTQLKRKWNRLCHCLHQSKQPQKHLNWSNSYTSNTKIYPYTSSSSISFANNATKPTHSSNLVPRFRRQQSCTIEFNFNDKRQATEPVFDSLESMEGKEVKITLALGNGGSGETVENITDKTLQRAHVCKLLQENVPWQSEIVPSIAEALIDSKSAKQSNITWLFMQGNDSIGKRRLALAVAESVFGSANFLLHLDMLKKAPFSEILAGALKTHQQLVVLIESVDFADTQFKKFLSDGFETKKFGNSSSTEEKSGQVIFILTNGGSKSIEEQNQDSVIRLLCQISETKPNLETPCLGHKRRAELDLFSNIKSPRIEEKEETLLVSKQGTIKKDFSRQSSFNTLDLNMKADEEDEAGESSPISSDLTRETIIDSLNSNGFLESIENRFEFNTSLARDREMAELFLSKIKGSFVEVSGKQCMVNFSVDERVIEELCVGCGSFTNSLFKKWLKDIFQSSLETVNFGGKGGILFRLCWGGKGDTKSDSGFMGSSLPRSIQVNYFIE. 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00735 1005 ProSiteProfiles Clp repeat (R) domain profile. 8 171 IPR004176 -
Seca12g00735 1005 Gene3D - 612 796 IPR027417 -
Seca12g00735 1005 FunFam protein SUPPRESSOR OF MAX2 1 9 171 - -
Seca12g00735 1005 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Seca12g00735 1005 Coils Coil 454 474 - -
Seca12g00735 1005 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 971 - -
Seca12g00735 1005 Gene3D - 9 169 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00735 Seca-Chr12 6722612 6726398 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00735 - - gmx:100816045 1475.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00735 12 6722612 6726398 Seca12g00735 12 6722612 6726398 ECH
Seca12g00735 12 6722612 6726398 Seca6g03804 6 105492826 105496967 PCT