Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03796 ATGGCGGAACTTCAACAGTTTCAGCATCATAAGCAGCCGACGATGATGATGATGAGGAATAAGAGAGAAAGAAGCAAAAACACCGAAATGGAGAATAAGGAGAAAGATAGTCTTCAAATAGTGGACTTGAGTGGCATGTCCTTCGACTCACTTCCCATACCTTCCTTTGATTTGGCTACCATTACCAACTTGAACCTCTCTAATAACAATCTCCAGGAGATTCCGGAATCGTTAACGGCGAGATTACTAAACTTGGTGGTGTTGGACGTGCACTCCAACCAGCTTACCTCCCTTCCCAATTCCATTGGCTGTCTCTCTAAGCTCCACCTCTTGAATGTCTCTGCCAACTTCATTCAATCCCTTCCCAAAACCATTCACAATTGCAGAGCCTTAGAAGAAGTGAATGCCAATTTCAACAAGTTGAGCAAGTTGCCAGACACAATAGGATTTGAGCTCATAAACCTCAAGAAACTTGCAGTCAACTCCAACAAACTGGTTTTTCTTCCTAGCTCCACCTCTCACCTAACAACTCTGAAGGTTCTTGATGCACGCTTAAACTGCCTTAGGTCTCTCCCTGATGACCTTGAGAACCTCATCAACCTTGAGACACTGAATGTGAGTCAGAATTTTCAGTACCTGGAGTCACTACCTTACTCCATAGGGCTCCTCTTATCCCTGGTGGAATTAGATGTTAGCTACAACAATATAAAGACCTTGCCTAACTCCATTGGTTGCCTCATGAAGCTCCAAAAGCTATGTGTGGAAGGAAACCCACTGAGTTCACCTCCATTAGAGGTGGTGGAGCAAGGGCTGCATGTGGTGAAGGAGTATATGTGTCATAAGATGAACTCATCATCATCAAGTCATCAAAGCCCAACCAAGAAGAAGAGGTCATGGATGGGGAAGTTGGTTAAATGTGGGACTTTTAATGGACACGTGAGAAGTAGGAAACAAGTAGAGGAAAATAAGGGTTTCAGCAAGTTGCAGTATCAACCTATCAATGGTCTTGCTTCGCCAGGGATTATGGGGAAGTTCTCACCTCTTCGCCTTTTCTCACCTCGTCGTTCCTTTAGTTGA 1077 0.442 MAELQQFQHHKQPTMMMMRNKRERSKNTEMENKEKDSLQIVDLSGMSFDSLPIPSFDLATITNLNLSNNNLQEIPESLTARLLNLVVLDVHSNQLTSLPNSIGCLSKLHLLNVSANFIQSLPKTIHNCRALEEVNANFNKLSKLPDTIGFELINLKKLAVNSNKLVFLPSSTSHLTTLKVLDARLNCLRSLPDDLENLINLETLNVSQNFQYLESLPYSIGLLLSLVELDVSYNNIKTLPNSIGCLMKLQKLCVEGNPLSSPPLEVVEQGLHVVKEYMCHKMNSSSSSHQSPTKKKRSWMGKLVKCGTFNGHVRSRKQVEENKGFSKLQYQPINGLASPGIMGKFSPLRLFSPRRSFS. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03796 358 SMART LRR_bac_2 175 194 - -
Seca6g03796 358 SMART LRR_bac_2 128 147 - -
Seca6g03796 358 SMART LRR_bac_2 223 242 - -
Seca6g03796 358 SMART LRR_bac_2 82 101 - -
Seca6g03796 358 SMART LRR_bac_2 152 171 - -
Seca6g03796 358 SMART LRR_bac_2 58 77 - -
Seca6g03796 358 SMART LRR_bac_2 105 124 - -
Seca6g03796 358 SMART LRR_bac_2 198 219 - -
Seca6g03796 358 SUPERFAMILY L domain-like 37 264 - -
Seca6g03796 358 ProSiteProfiles Leucine-rich repeat profile. 225 246 IPR001611 GO:0005515
Seca6g03796 358 Pfam Leucine rich repeat 61 116 IPR001611 GO:0005515
Seca6g03796 358 Gene3D Ribonuclease Inhibitor 211 278 IPR032675 -
Seca6g03796 358 Gene3D Ribonuclease Inhibitor 2 210 IPR032675 -
Seca6g03796 358 MobiDBLite consensus disorder prediction 16 34 - -
Seca6g03796 358 SMART LRR_typ_2 58 81 IPR003591 -
Seca6g03796 358 SMART LRR_typ_2 82 104 IPR003591 -
Seca6g03796 358 SMART LRR_typ_2 223 246 IPR003591 -
Seca6g03796 358 SMART LRR_typ_2 152 174 IPR003591 -
Seca6g03796 358 SMART LRR_typ_2 175 198 IPR003591 -
Seca6g03796 358 SMART LRR_typ_2 105 128 IPR003591 -
Seca6g03796 358 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 8 179 - -
Seca6g03796 358 MobiDBLite consensus disorder prediction 1 34 - -
Seca6g03796 358 ProSiteProfiles Leucine-rich repeat profile. 60 81 IPR001611 GO:0005515
Seca6g03796 358 ProSiteProfiles Leucine-rich repeat profile. 84 105 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03796 Seca-Chr6 105313285 105320247 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03796 32 257 Receptor kinase-like Gene Family AT4G04220 33.058 1.45e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03796 - - lja:Lj6g3v1315120.1 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03796 6 105313285 105320247 Seca6g03796 6 105313285 105320247 ECH
Seca12g00723 12 6617530 6621472 Seca6g03796 6 105313285 105320247 PCT