Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00723 ATGATGTACGAACAGCAACGGTTTCAGCCGATGATGAAGATAAAGACGACGGAGAGGAACAAAGGGATAGAGGAAGAGAGGCTTGAGATAATCGACTTGAGTGGCATGTCCTTGGAGTCACTTCCCAATCCCTCTCTTAATTTAGCTACCATTTGCAAGTTAGACCTCTCTAATAACAATCTTCAGAATATTCCGGAGTCGTTAACGGCGAGATTGCTGAACGTGGTGGTTTTGGATGTGCACTCCAACCAGCTCAGGTCTCTCCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGATTTTGAATGTCTCTGGCAACCTCATCGAATACCTTCCCAAAACAATTGAGAATTGCAGAGCGTTAGAAGAACTGAATGCAAACTTCAACAAATTGATCCAACTACCAGACACGATAGGGTTTGAGCTGTTAAACCTGAAGAAGCTTGCAGTGAACTCCAACAAACTAGTGTTCCTTCCACGCTCCACCTCTCACCTGACATCTCTCAAGATTCTGGACGCTCGCCTTAACTGCCTCAGGTCTCTCCCAGAGGATCTTGAGAATCTCATCAACCTCGAAATCCTCAACGTCAGCCAGAACTTCCAATACCTCGAGTCTCTTCCTTACTCCATAGGCCTCCTCTTGTCCCTCGTTGAACTCGACGTCAGTTACAACAAGATCAAGTCCTTACCTGATTCCATTGGCTGCCTCAAGAAGCTTCAGAAGCTAAGTGTGGAAGGGAACCCGCTGACGTCACCACCACCTGAAGTGGTAGAGCAGGGATTGCATGCGGTGAAGGAGTACCTGGGCCAGAAAATGAACGCGGGCCATCAAAGCCCAACAAAGAAGAAGTCATCATGGGTTGGAAGGTTGGTCAAGTATGGGACATTCAATGGACACATGAGAAGTGGGCCTCGTGAGGAACGTGAGGCTTTTATTGTGCCTGAGTATAGACCCATCGATGCACTTGCCTCGCCTCGTTACATGGGCATGTTTTCACCTCGTCGCCTCTTCTCACCACGTAATTACTTCACCAATTAA 1038 0.4759 MMYEQQRFQPMMKIKTTERNKGIEEERLEIIDLSGMSLESLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNVVVLDVHSNQLRSLPNSIGCLSKLKILNVSGNLIEYLPKTIENCRALEELNANFNKLIQLPDTIGFELLNLKKLAVNSNKLVFLPRSTSHLTSLKILDARLNCLRSLPEDLENLINLEILNVSQNFQYLESLPYSIGLLLSLVELDVSYNKIKSLPDSIGCLKKLQKLSVEGNPLTSPPPEVVEQGLHAVKEYLGQKMNAGHQSPTKKKSSWVGRLVKYGTFNGHMRSGPREEREAFIVPEYRPIDALASPRYMGMFSPRRLFSPRNYFTN. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00723 345 Gene3D Ribonuclease Inhibitor 2 135 IPR032675 -
Seca12g00723 345 Gene3D Ribonuclease Inhibitor 136 270 IPR032675 -
Seca12g00723 345 ProSiteProfiles Leucine-rich repeat profile. 215 236 IPR001611 GO:0005515
Seca12g00723 345 SUPERFAMILY L domain-like 27 258 - -
Seca12g00723 345 ProSiteProfiles Leucine-rich repeat profile. 50 71 IPR001611 GO:0005515
Seca12g00723 345 PANTHER - 142 279 - -
Seca12g00723 345 Pfam Leucine rich repeat 53 108 IPR001611 GO:0005515
Seca12g00723 345 SMART LRR_bac_2 48 67 - -
Seca12g00723 345 SMART LRR_bac_2 95 114 - -
Seca12g00723 345 SMART LRR_bac_2 118 137 - -
Seca12g00723 345 SMART LRR_bac_2 188 209 - -
Seca12g00723 345 SMART LRR_bac_2 213 232 - -
Seca12g00723 345 SMART LRR_bac_2 142 161 - -
Seca12g00723 345 SMART LRR_bac_2 165 184 - -
Seca12g00723 345 SMART LRR_typ_2 48 71 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 72 94 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 95 118 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 119 141 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 165 188 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 236 259 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 213 235 IPR003591 -
Seca12g00723 345 SMART LRR_typ_2 142 164 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00723 Seca-Chr12 6617530 6621472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00723 26 257 Receptor kinase-like Gene Family AT1G12460 29.958 9.21e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00723 - - gmx:100783239 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00723 12 6617530 6621472 Seca12g00723 12 6617530 6621472 ECH
Seca12g00723 12 6617530 6621472 Seca6g03796 6 105313285 105320247 PCT