Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03769 ATGGCGAGGAAAATCACGGTTTCAAAATTTAAGGCCGTGTTATGGCTATCCAGCATAGTAGTGTTCACACAAGGACAACAACAAGCCAGAGGGCTATCCCCAAAGCTTAGTCGTGACCCTGAAACCCTCTCACTAGCCGCAACCGATTACGGCCACATAGTTCACGAGACGCCTTGGGCGGTTTTAGAGCCAACGTCCGTTAGTGATATAACGGACTTGATAAAGCACTCAAACTCTCTTGGAACCCCTTTTACCATAGCAGCCAGAGGGCGAGCCCACTCGCTTCTTGGACAATCCATGACACGAGGTGGGGTCGTGGTGAACATGACTCAACTTAACGGTTTCAGAAATGGATCTGGGATTGTAGTGTCTCAATATTGTGATGGGAAAAAGAGTCAATTGGGTAATTGTTATGCTGATGTGGGTGGTGAGCAAATTTGGATTGATGGCTTGCATGCAAGCCTTGAACGTGGACTCACACCTTTGTCTTGGACTGATTACTTGTATTTGACGGTTGGTGGCACGCTCTCTAATGCTGGCATCAGTGGCCAAGCCTTTCGATTCGGACCTCAAATCTCCAATGTTCTTGAATTCGACATTGTTACCGGGAAAGGAGACCTTGTAACTTGTTCTGCGGAGAACAACTCAGAGGCATTTTACGCCGTTCTTGGAGGATTAGGTCAGTTCGGGGTAATAACCAGAGCTAGAATAGCTCTAGGACCTGCACCTACCAGGGTGAAGTGGCTCCATCTGCTTTACAATGACTTTTCTGCCTTTTCTAGAGACCAAGAACATTTAATCACATTCGATAAAAGAAATGACACTAATGGGGCAGATTATGTAGAAGGTATGCTTCTATTGAATCAGCCACCATTGGATCTTTCCTTTTATCCAAATCCTGATCAGCCAAGGATAACTTCACTGGTAACTCAATATGGCATCATCTACATCCTAGAGCTAGCCAAATATTATGACAATAATTCTCAAGCACGCATCAACGAGGAAGTTGGAAATTTGGTCAAAGGGTTAAAGTTTGTTCCTACGTTTATGTTCGAAAAAGATGTGTCATATGAGGAATTTCTAAACAGAGTTCATGCAGAGGAGCTAGCTCTTAGGCCAAAGGGACTCTGGGATGTTCCTCATCCTTGGTTGAACATATTCATTCCAAGATCTCAAATCTTGGATTTTAATGAAGGCGTGTTCAAGGGCATTATTCTTAAGCAAAATATTACGGTCGGAATTGCTCTTGTCTACCCCATGAACAGAAACAAGTGGGATGATAGAATGTCAGCTGTTACACCAGAGGAAGATGTTTTCTATGCTGTAAGTCTTTTGCATGCTGCAAATGGGTCAGATCAGGTGAAGAAATTTCAGGCTCAAAACCAAGAGATACTACAGTTTTGTAAAGATGCTGGTATTAAGATTAAGGAATATCTCACTGGAAATAAAACACATCAAGAATGGGTGGAGCACTTTGGCGCCAAATGGCAACTTTTTGAAGATAGGAAAGCTAAATTTGATCCCAAAAGAATATTGTCACCTGGACAGGGGATTTTCCAATAA 1563 0.4299 MARKITVSKFKAVLWLSSIVVFTQGQQQARGLSPKLSRDPETLSLAATDYGHIVHETPWAVLEPTSVSDITDLIKHSNSLGTPFTIAARGRAHSLLGQSMTRGGVVVNMTQLNGFRNGSGIVVSQYCDGKKSQLGNCYADVGGEQIWIDGLHASLERGLTPLSWTDYLYLTVGGTLSNAGISGQAFRFGPQISNVLEFDIVTGKGDLVTCSAENNSEAFYAVLGGLGQFGVITRARIALGPAPTRVKWLHLLYNDFSAFSRDQEHLITFDKRNDTNGADYVEGMLLLNQPPLDLSFYPNPDQPRITSLVTQYGIIYILELAKYYDNNSQARINEEVGNLVKGLKFVPTFMFEKDVSYEEFLNRVHAEELALRPKGLWDVPHPWLNIFIPRSQILDFNEGVFKGIILKQNITVGIALVYPMNRNKWDDRMSAVTPEEDVFYAVSLLHAANGSDQVKKFQAQNQEILQFCKDAGIKIKEYLTGNKTHQEWVEHFGAKWQLFEDRKAKFDPKRILSPGQGIFQ. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03769 520 PANTHER GULONOLACTONE OXIDASE 25 520 - -
Seca6g03769 520 ProSiteProfiles PCMH-type FAD-binding domain profile. 54 242 IPR016166 GO:0071949
Seca6g03769 520 SUPERFAMILY FAD-linked oxidases, C-terminal domain 243 519 IPR016164 GO:0003824|GO:0050660
Seca6g03769 520 Gene3D - 109 244 IPR016169 -
Seca6g03769 520 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 243 519 IPR015345 GO:0009690|GO:0019139|GO:0050660
Seca6g03769 520 SUPERFAMILY FAD-binding/transporter-associated domain-like 35 241 IPR036318 GO:0050660
Seca6g03769 520 Gene3D - 39 519 IPR016167 -
Seca6g03769 520 Gene3D - 245 478 IPR016170 -
Seca6g03769 520 Pfam FAD binding domain 60 211 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03769 Seca-Chr6 105022604 105028605 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03769 K00279 - gmx:100816815 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00690 12 6280266 6284760 Seca6g03769 6 105022604 105028605 PCT